Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6J74_RS02290 Genome accession   NZ_AP024819
Coordinates   447297..448349 (-) Length   350 a.a.
NCBI ID   WP_221272283.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442297..453349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS02265 (NHP190012_04650) - 443207..443924 (+) 718 Protein_455 hypothetical protein -
  K6J74_RS02270 (NHP190012_04660) - 443921..444799 (-) 879 WP_221272279.1 pseudouridine synthase -
  K6J74_RS02275 (NHP190012_04670) - 444799..446433 (-) 1635 WP_221272280.1 CTP synthase -
  K6J74_RS02280 (NHP190012_04680) - 446453..447037 (-) 585 WP_221272281.1 AMIN domain-containing protein -
  K6J74_RS02285 (NHP190012_04690) - 447037..447288 (-) 252 WP_221272282.1 hypothetical protein -
  K6J74_RS02290 (NHP190012_04700) recA 447297..448349 (-) 1053 WP_221272283.1 recombinase RecA Machinery gene
  K6J74_RS08405 - 448512..448637 (+) 126 WP_260321658.1 hypothetical protein -
  K6J74_RS02295 (NHP190012_04710) thrS 448650..450455 (+) 1806 WP_221272284.1 threonine--tRNA ligase -
  K6J74_RS02300 (NHP190012_04720) infC 450452..451018 (+) 567 Protein_463 translation initiation factor IF-3 -
  K6J74_RS02305 (NHP190012_04730) rpmI 450984..451175 (+) 192 WP_221272286.1 50S ribosomal protein L35 -
  K6J74_RS02310 (NHP190012_04740) rplT 451250..451600 (+) 351 WP_221272287.1 50S ribosomal protein L20 -
  K6J74_RS02315 (NHP190012_04750) - 451753..452730 (+) 978 WP_221272288.1 outer membrane protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38052.43 Da        Isoelectric Point: 5.7205

>NTDB_id=88597 K6J74_RS02290 WP_221272283.1 447297..448349(-) (recA) [Helicobacter sp. NHP19-012]
MDEQKQKAIESAIRQIDKAFGKGALMRLGDREVEHIEGISTGSLGLDVALGIGGVPRGRIVEIYGPESSGKTTLTLHVVA
QAQKNGGACAFIDAEHALDVKYAKSLGVDTDNLLISQPDTGEEALEILETLARTGAVDVIVVDSVAALTPRAEIEGDMGD
QHVGLQARLMSQALRKITGILHKMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQPIGN
RVRVKVVKNKVAPPFKEAEFDVMYGSGISFEGELIDYGVKLDFVEKSGAWFSYQDRKLGQGREAAKLTLKNEPELAHEIA
EKIRGKFFERPALAEPSAPESPEPSHTELD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=88597 K6J74_RS02290 WP_221272283.1 447297..448349(-) (recA) [Helicobacter sp. NHP19-012]
ATGGACGAGCAAAAACAAAAGGCGATTGAATCTGCCATTAGGCAGATCGATAAAGCCTTTGGCAAGGGGGCTTTAATGCG
TTTGGGCGATCGCGAGGTCGAGCACATTGAGGGCATTTCTACGGGGTCTTTGGGGCTGGATGTGGCTTTAGGCATTGGGG
GCGTGCCTAGGGGGCGGATTGTCGAAATCTATGGACCTGAGTCGAGCGGGAAAACGACCTTGACCTTGCATGTCGTGGCG
CAAGCGCAAAAAAACGGGGGGGCATGTGCTTTTATTGATGCTGAGCATGCGCTAGATGTCAAATACGCTAAAAGTCTTGG
AGTGGATACAGATAACCTACTCATCTCTCAGCCCGACACGGGCGAGGAAGCCCTAGAAATTTTAGAAACCTTAGCGCGCA
CGGGGGCAGTGGATGTGATTGTGGTCGACTCAGTGGCGGCACTCACGCCCAGAGCCGAGATCGAGGGGGATATGGGCGAT
CAGCATGTGGGCTTGCAAGCCCGCTTGATGAGCCAAGCTCTGCGTAAAATCACGGGCATTTTGCACAAGATGAACACCAC
TTTGATTTTCATCAACCAAATCCGCATGAAAATCGGGACAATGGGCTATGGCAGCCCGGAAACCACCACGGGGGGTAATG
CCTTAAAATTCTATGCGAGTGTGCGCATCGACATCCGCCGTATCGCCACGCTCAAACAAAACGAGCAACCCATCGGTAAT
CGGGTGCGCGTCAAGGTGGTGAAAAACAAGGTCGCCCCACCCTTCAAAGAAGCCGAGTTTGATGTGATGTATGGCAGTGG
GATCAGCTTTGAGGGGGAGCTCATCGACTACGGCGTGAAGTTGGACTTTGTGGAAAAATCCGGGGCGTGGTTTAGCTACC
AAGATCGAAAACTAGGGCAGGGCAGAGAGGCGGCCAAACTCACGCTCAAAAACGAGCCCGAGCTCGCCCACGAGATCGCC
GAAAAGATCCGAGGTAAGTTCTTTGAACGCCCCGCTTTGGCAGAACCTAGTGCACCAGAAAGTCCCGAGCCTAGCCATAC
AGAACTAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

80.247

92.571

0.743
  recA Helicobacter pylori strain NCTC11637

80.247

92.571

0.743
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.852

92.571

0.711
  recA Glaesserella parasuis strain SC1401

62.248

99.143

0.617
  recA Neisseria gonorrhoeae MS11

66.154

92.857

0.614
  recA Neisseria gonorrhoeae strain FA1090

66.154

92.857

0.614
  recA Neisseria gonorrhoeae MS11

66.154

92.857

0.614
  recA Vibrio cholerae strain A1552

66.358

92.571

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.358

92.571

0.614
  recA Pseudomonas stutzeri DSM 10701

65.244

93.714

0.611
  recA Acinetobacter baylyi ADP1

61.516

98

0.603
  recA Acinetobacter baumannii D1279779

63.72

93.714

0.597
  recA Ralstonia pseudosolanacearum GMI1000

67.638

88.286

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

94.857

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

61.61

92.286

0.569
  recA Streptococcus pyogenes NZ131

58.967

94

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.938

92

0.551
  recA Streptococcus pneumoniae R6

58.841

93.714

0.551
  recA Streptococcus pneumoniae Rx1

58.841

93.714

0.551
  recA Streptococcus pneumoniae D39

58.841

93.714

0.551
  recA Streptococcus pneumoniae TIGR4

58.841

93.714

0.551
  recA Streptococcus mitis SK321

58.232

93.714

0.546
  recA Streptococcus mitis NCTC 12261

58.232

93.714

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

58.769

92.857

0.546
  recA Streptococcus mutans UA159

57.447

94

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.538

92.857

0.534

Multiple sequence alignment