Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BIV20_RS08675 Genome accession   NZ_CP135164
Coordinates   1736336..1737388 (-) Length   350 a.a.
NCBI ID   WP_075720104.1    Uniprot ID   -
Organism   Roseburia sp. 499     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731336..1742388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIV20_RS08650 (BIV20_08650) xerD 1731655..1732539 (-) 885 WP_075720558.1 site-specific tyrosine recombinase XerD -
  BIV20_RS08655 (BIV20_08655) - 1732736..1733353 (-) 618 WP_075720096.1 stage II sporulation protein M -
  BIV20_RS08660 (BIV20_08660) - 1733397..1733930 (-) 534 WP_330554283.1 NUDIX hydrolase -
  BIV20_RS08665 (BIV20_08665) rny 1734014..1735561 (-) 1548 WP_075720100.1 ribonuclease Y -
  BIV20_RS08670 (BIV20_08670) - 1735736..1736332 (-) 597 WP_075720102.1 regulatory protein RecX -
  BIV20_RS08675 (BIV20_08675) recA 1736336..1737388 (-) 1053 WP_075720104.1 recombinase RecA Machinery gene
  BIV20_RS08680 (BIV20_08680) trxA 1737598..1737909 (-) 312 WP_075720106.1 thioredoxin -
  BIV20_RS08685 (BIV20_08685) - 1738106..1739179 (+) 1074 WP_075720108.1 DUF4118 domain-containing protein -
  BIV20_RS08690 (BIV20_08690) - 1739172..1739882 (+) 711 WP_075720110.1 response regulator transcription factor -
  BIV20_RS08695 (BIV20_08695) - 1740101..1741024 (-) 924 WP_075720112.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37923.37 Da        Isoelectric Point: 4.9996

>NTDB_id=885789 BIV20_RS08675 WP_075720104.1 1736336..1737388(-) (recA) [Roseburia sp. 499]
MAKDDRLSALDAAIAKIEKDYGKGSIMKLGDSVANMNVETVPTGCLSLDLALGVGGVPKGRIIEIYGPESSGKTTVALHM
VAAVQKQGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIETLKQGGEFIG
NRVRVKVVKNKVAPPFKEAEFDIMFGQGISREGDILDIAADLGIINKSGAWYAYNGEKIGQGRENAKQYLKENELVCAEV
EAKVREHFKPEENKEEPEAKKEAEQDITKE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=885789 BIV20_RS08675 WP_075720104.1 1736336..1737388(-) (recA) [Roseburia sp. 499]
ATGGCAAAGGATGATAGATTAAGTGCATTAGACGCGGCAATTGCGAAAATTGAAAAGGATTACGGAAAGGGCTCCATTAT
GAAATTAGGAGATTCCGTAGCGAATATGAATGTAGAAACAGTACCTACTGGGTGTTTAAGTCTGGATTTAGCTTTAGGAG
TAGGTGGCGTACCGAAGGGACGTATCATTGAGATATATGGACCGGAATCTAGTGGTAAGACTACAGTAGCATTACATATG
GTAGCAGCAGTACAGAAGCAGGGAGGAATTGCAGGTTTTATTGATGCGGAACATGCATTGGATCCTGTATATGCTAAAAA
TATAGGGGTAGACATTGATAATCTTTATATTTCACAGCCGGATAACGGAGAGCAGGCATTGGAGATTACAGAAACTATGG
TTCGTTCCGGAGCTGTGGATATTGTAATTGTTGACTCGGTAGCAGCGTTAGTTCCAAAGGCGGAAATTGATGGTGATATG
GGTGATTCTCATGTGGGGCTTCAGGCAAGGCTAATGTCACAGGCATTGCGTAAGTTAACGGCAGTAATCAGTAAGTCTAA
CTGTATTGTTATTTTTATCAATCAGCTTCGTGAAAAAGTAGGAGTTATGTTTGGTAATCCTGAGACTACTACCGGAGGAC
GTGCACTCAAATTTTATTCTTCTGTTCGTATGGATGTAAGAAGAATTGAGACATTGAAACAAGGTGGAGAGTTTATTGGA
AACCGTGTCAGAGTAAAAGTGGTCAAGAATAAAGTTGCACCGCCATTTAAAGAAGCAGAATTTGATATCATGTTTGGTCA
GGGAATCTCTAGAGAAGGTGATATTCTGGATATTGCGGCAGACCTTGGAATTATTAATAAATCCGGTGCGTGGTATGCTT
ATAATGGTGAGAAGATTGGTCAAGGACGTGAAAATGCAAAACAATATTTAAAGGAAAATGAATTAGTTTGTGCAGAAGTA
GAGGCAAAGGTAAGAGAACATTTTAAGCCGGAAGAAAATAAGGAAGAACCTGAGGCAAAAAAGGAAGCAGAACAGGATAT
AACAAAGGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

66.377

98.571

0.654
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

94

0.643
  recA Streptococcus mutans UA159

63.897

99.714

0.637
  recA Streptococcus pneumoniae Rx1

62.323

100

0.629
  recA Streptococcus pneumoniae TIGR4

62.323

100

0.629
  recA Streptococcus pneumoniae R6

62.323

100

0.629
  recA Streptococcus pneumoniae D39

62.323

100

0.629
  recA Streptococcus mitis SK321

64.327

97.714

0.629
  recA Streptococcus mitis NCTC 12261

63.743

97.714

0.623
  recA Streptococcus pyogenes NZ131

65.35

94

0.614
  recA Lactococcus lactis subsp. cremoris KW2

66.154

92.857

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

94.571

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.839

92

0.606
  recA Neisseria gonorrhoeae MS11

65.839

92

0.606
  recA Neisseria gonorrhoeae MS11

65.839

92

0.606
  recA Glaesserella parasuis strain SC1401

64.615

92.857

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.087

92.286

0.591
  recA Helicobacter pylori strain NCTC11637

62.727

94.286

0.591
  recA Helicobacter pylori 26695

62.727

94.286

0.591
  recA Vibrio cholerae strain A1552

61.747

94.857

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.747

94.857

0.586
  recA Acinetobacter baylyi ADP1

59.593

98.286

0.586
  recA Pseudomonas stutzeri DSM 10701

58.96

98.857

0.583
  recA Acinetobacter baumannii D1279779

59.475

98

0.583
  recA Ralstonia pseudosolanacearum GMI1000

64.423

89.143

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

92.571

0.563