Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BIV16_RS07450 Genome accession   NZ_CP135162
Coordinates   1574489..1575544 (-) Length   351 a.a.
NCBI ID   WP_075678444.1    Uniprot ID   -
Organism   Roseburia sp. 831b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569489..1580544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIV16_RS07425 (BIV16_07460) xerD 1569553..1570437 (-) 885 WP_075678449.1 site-specific tyrosine recombinase XerD -
  BIV16_RS07430 (BIV16_07465) - 1570645..1571217 (-) 573 WP_075678448.1 hypothetical protein -
  BIV16_RS07435 (BIV16_07470) - 1571260..1571820 (-) 561 WP_083624955.1 NUDIX hydrolase -
  BIV16_RS07440 (BIV16_07475) rny 1572088..1573632 (-) 1545 WP_075678446.1 ribonuclease Y -
  BIV16_RS07445 (BIV16_07480) - 1573841..1574470 (-) 630 WP_075678445.1 regulatory protein RecX -
  BIV16_RS07450 (BIV16_07485) recA 1574489..1575544 (-) 1056 WP_075678444.1 recombinase RecA Machinery gene
  BIV16_RS07455 (BIV16_07490) trxA 1575921..1576259 (-) 339 WP_075678443.1 thioredoxin -
  BIV16_RS07460 (BIV16_07495) - 1576271..1577860 (-) 1590 WP_075678442.1 peptide chain release factor 3 -
  BIV16_RS07465 (BIV16_07500) - 1577879..1579036 (-) 1158 WP_075678441.1 phosphopentomutase -
  BIV16_RS07470 (BIV16_07505) - 1579187..1579900 (-) 714 WP_075678440.1 SpoIIIAH-like family protein -
  BIV16_RS07475 (BIV16_07510) - 1579897..1580505 (-) 609 WP_075678956.1 hypothetical protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37879.26 Da        Isoelectric Point: 4.9146

>NTDB_id=885773 BIV16_RS07450 WP_075678444.1 1574489..1575544(-) (recA) [Roseburia sp. 831b]
MAKEDKLKALDAAISQIEKQYGKGSVMKLGDNSASMNVETVPTGSLSLDIALGLGGLPKGRIIEIYGPESSGKTTVALHA
VAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDCGEQALEITETMIRSGAVDIVIVDSVAALVPKAEIDGDM
GDSHVGLQARLMSQGLRKLTSVVSKSNCIVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRMDVRRIEALKQGGEVIG
NRTRVKIVKNKVAPPFKEAEFDIMFGKGISKEGDILDLAANVGIINKSGAWYAYNGEKIGQGRENAKNYLRENPLICEEV
EAKVRDHFKVDMDGEPEEDTAKAPEVELSEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=885773 BIV16_RS07450 WP_075678444.1 1574489..1575544(-) (recA) [Roseburia sp. 831b]
ATGGCGAAAGAAGATAAATTGAAAGCATTGGATGCTGCAATCTCTCAGATTGAGAAGCAGTATGGTAAGGGATCTGTTAT
GAAGTTGGGAGACAACTCTGCAAGCATGAATGTAGAGACGGTTCCAACCGGTTCCTTAAGTTTAGATATTGCATTAGGAC
TTGGCGGACTTCCAAAAGGACGTATTATTGAGATTTACGGACCAGAGTCCAGTGGTAAGACAACAGTTGCACTTCACGCA
GTTGCGGAAGTACAAAAGAGAGGCGGAATTGCGGGATTTATTGATGCAGAGCATGCCTTAGATCCGGTATATGCGAAGAA
TATCGGGGTTGATATTGATAATCTTTATATTTCACAGCCAGACTGCGGAGAACAGGCACTTGAGATTACAGAGACCATGA
TTCGTTCTGGCGCTGTAGACATTGTCATCGTCGATTCTGTTGCGGCACTTGTTCCTAAGGCTGAGATTGATGGTGATATG
GGAGATTCCCATGTGGGACTTCAGGCAAGACTTATGAGTCAGGGACTTCGTAAGTTAACTTCCGTAGTCAGCAAGTCTAA
CTGTATCGTAATTTTTATCAACCAGTTGCGTGAGAAGATTGGTGTCATGTTTGGTAACCCTGAGACAACAACGGGTGGAC
GTGCGTTGAAGTTCTATTCTTCTGTTCGTATGGATGTCAGAAGAATTGAGGCATTGAAACAGGGCGGTGAAGTGATTGGT
AATAGAACCCGTGTTAAGATTGTAAAGAATAAGGTTGCACCTCCATTTAAGGAGGCAGAATTTGATATCATGTTCGGTAA
AGGTATTTCCAAAGAGGGAGATATTCTTGACCTGGCAGCGAATGTTGGTATTATCAATAAGTCTGGTGCATGGTATGCAT
ACAATGGCGAGAAAATTGGTCAGGGTAGAGAGAATGCCAAGAATTATCTGAGAGAGAATCCACTTATCTGTGAAGAGGTT
GAGGCAAAAGTGCGCGATCATTTTAAAGTGGATATGGATGGTGAACCAGAAGAAGATACTGCCAAGGCACCGGAAGTAGA
GTTAAGCGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.879

94.017

0.638
  recA Streptococcus pneumoniae TIGR4

64.307

96.581

0.621
  recA Streptococcus pneumoniae R6

64.307

96.581

0.621
  recA Streptococcus pneumoniae D39

64.307

96.581

0.621
  recA Streptococcus pneumoniae Rx1

64.307

96.581

0.621
  recA Neisseria gonorrhoeae MS11

62.899

98.291

0.618
  recA Neisseria gonorrhoeae MS11

62.899

98.291

0.618
  recA Neisseria gonorrhoeae strain FA1090

62.899

98.291

0.618
  recA Streptococcus mutans UA159

61.891

99.43

0.615
  recA Streptococcus mitis SK321

63.422

96.581

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

63.422

96.581

0.613
  recA Streptococcus mitis NCTC 12261

64.759

94.587

0.613
  recA Acinetobacter baumannii D1279779

65.538

92.593

0.607
  recA Acinetobacter baylyi ADP1

65.538

92.593

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

94.302

0.607
  recA Streptococcus pyogenes NZ131

64.134

93.732

0.601
  recA Vibrio cholerae strain A1552

64.923

92.593

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.923

92.593

0.601
  recA Lactococcus lactis subsp. cremoris KW2

65.217

91.738

0.598
  recA Glaesserella parasuis strain SC1401

64.308

92.593

0.595
  recA Pseudomonas stutzeri DSM 10701

63.914

93.162

0.595
  recA Helicobacter pylori strain NCTC11637

64.198

92.308

0.593
  recA Helicobacter pylori 26695

63.889

92.308

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

93.732

0.581
  recA Ralstonia pseudosolanacearum GMI1000

64.65

89.459

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

92.593

0.561