Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OCUAc18_RS11390 Genome accession   NZ_AP024802
Coordinates   2321715..2322764 (+) Length   349 a.a.
NCBI ID   WP_000344169.1    Uniprot ID   N9L2B2
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2304536..2322764 2321715..2322764 within 0


Gene organization within MGE regions


Location: 2304536..2322764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS11285 - 2305803..2305937 (+) 135 Protein_2218 universal stress protein -
  OCUAc18_RS11290 (OCUAc18_22150) - 2305992..2307434 (-) 1443 WP_001032852.1 glucose/sorbosone family PQQ-dependent dehydrogenase -
  OCUAc18_RS11295 (OCUAc18_22160) - 2307789..2308427 (+) 639 WP_000332542.1 SOS response-associated peptidase family protein -
  OCUAc18_RS11300 (OCUAc18_22170) - 2308665..2310119 (+) 1455 WP_002126091.1 SulP family inorganic anion transporter -
  OCUAc18_RS11305 (OCUAc18_22180) - 2310167..2311345 (-) 1179 WP_001026381.1 S8 family peptidase -
  OCUAc18_RS11310 - 2311462..2311668 (-) 207 Protein_2223 IS5/IS1182 family transposase -
  OCUAc18_RS11315 (OCUAc18_22190) - 2311673..2312167 (-) 495 WP_001003818.1 IS630 family transposase -
  OCUAc18_RS11320 (OCUAc18_22200) - 2312215..2312520 (-) 306 WP_000122230.1 IS630 transposase-related protein -
  OCUAc18_RS11325 (OCUAc18_22210) - 2312542..2312838 (-) 297 Protein_2226 transposase -
  OCUAc18_RS11335 (OCUAc18_22240) - 2314142..2314594 (-) 453 Protein_2228 IS5-like element ISAba13 family transposase -
  OCUAc18_RS11340 (OCUAc18_22250) - 2314650..2315249 (-) 600 Protein_2229 alpha/beta hydrolase -
  OCUAc18_RS11345 (OCUAc18_22260) - 2315257..2316663 (-) 1407 WP_000093798.1 amino acid permease -
  OCUAc18_RS11350 (OCUAc18_22270) kynU 2316704..2317954 (-) 1251 WP_000632793.1 kynureninase -
  OCUAc18_RS11355 (OCUAc18_22280) gigD 2318102..2318551 (+) 450 WP_001099948.1 Lrp/AsnC family transcriptional regulator GigD -
  OCUAc18_RS11360 - 2318597..2319133 (+) 537 Protein_2233 GNAT family N-acetyltransferase -
  OCUAc18_RS11365 (OCUAc18_22310) - 2319185..2319478 (-) 294 WP_000689660.1 hypothetical protein -
  OCUAc18_RS11370 (OCUAc18_22320) - 2319593..2319829 (-) 237 WP_000525038.1 hypothetical protein -
  OCUAc18_RS11375 (OCUAc18_22330) - 2319928..2320287 (-) 360 WP_000798367.1 YcgJ family protein -
  OCUAc18_RS11380 (OCUAc18_22340) - 2320459..2321145 (+) 687 WP_001045477.1 HAD-IA family hydrolase -
  OCUAc18_RS11385 (OCUAc18_22350) - 2321129..2321569 (+) 441 WP_000040959.1 S4 domain-containing protein -
  OCUAc18_RS11390 (OCUAc18_22360) recA 2321715..2322764 (+) 1050 WP_000344169.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37891.25 Da        Isoelectric Point: 4.7769

>NTDB_id=88558 OCUAc18_RS11390 WP_000344169.1 2321715..2322764(+) (recA) [Acinetobacter baumannii strain OCU Ac18]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=88558 OCUAc18_RS11390 WP_000344169.1 2321715..2322764(+) (recA) [Acinetobacter baumannii strain OCU Ac18]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAACTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACACCCAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAGGCGCGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAACGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCTGTACAACAGGATATCGTACAGAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAATAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9L2B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.713

100

0.997
  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926
  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Streptococcus pyogenes NZ131

58.924

100

0.596
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539

Multiple sequence alignment