Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RPB40_RS17180 Genome accession   NZ_CP135117
Coordinates   3596787..3597845 (-) Length   352 a.a.
NCBI ID   WP_015571667.1    Uniprot ID   A0A837F5V8
Organism   Enterobacter hormaechei strain F2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3591787..3602845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB40_RS17165 (RPB40_17165) csrA 3593032..3593217 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  RPB40_RS17170 (RPB40_17170) alaS 3593459..3596086 (-) 2628 WP_032104726.1 alanine--tRNA ligase -
  RPB40_RS17175 (RPB40_17175) recX 3596218..3596718 (-) 501 WP_017382782.1 recombination regulator RecX -
  RPB40_RS17180 (RPB40_17180) recA 3596787..3597845 (-) 1059 WP_015571667.1 recombinase RecA Machinery gene
  RPB40_RS17185 (RPB40_17185) pncC 3597935..3598432 (-) 498 WP_003862172.1 nicotinamide-nucleotide amidase -
  RPB40_RS17190 (RPB40_17190) - 3598563..3599441 (-) 879 WP_022649141.1 metal ABC transporter substrate-binding protein -
  RPB40_RS17195 (RPB40_17195) - 3599456..3600316 (-) 861 WP_015571669.1 metal ABC transporter permease -
  RPB40_RS17200 (RPB40_17200) - 3600313..3600966 (-) 654 WP_017382783.1 metal ABC transporter ATP-binding protein -
  RPB40_RS17205 (RPB40_17205) mltB 3601257..3602357 (-) 1101 WP_015571672.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37804.24 Da        Isoelectric Point: 4.8095

>NTDB_id=885462 RPB40_RS17180 WP_015571667.1 3596787..3597845(-) (recA) [Enterobacter hormaechei strain F2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=885462 RPB40_RS17180 WP_015571667.1 3596787..3597845(-) (recA) [Enterobacter hormaechei strain F2]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACTACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCGGTCTATGCCCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATTTGTGACGCGCTGG
CGCGCTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCGGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGGGACAACGTAGTCGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAACAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837F5V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Pseudomonas stutzeri DSM 10701

73.121

98.295

0.719
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.966

98.864

0.682
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori strain NCTC11637

60.831

95.739

0.582
  recA Helicobacter pylori 26695

60.534

95.739

0.58
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

92.045

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

94.318

0.557