Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RDV63_RS13590 Genome accession   NZ_CP135084
Coordinates   2800741..2801775 (-) Length   344 a.a.
NCBI ID   WP_313910040.1    Uniprot ID   -
Organism   Rheinheimera sp. MMS21-TC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2795741..2806775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV63_RS13585 (RDV63_13585) metA 2799358..2800293 (-) 936 WP_313910039.1 homoserine O-succinyltransferase -
  RDV63_RS13590 (RDV63_13590) recA 2800741..2801775 (-) 1035 WP_313910040.1 recombinase RecA Machinery gene
  RDV63_RS13595 (RDV63_13595) - 2801838..2802329 (-) 492 WP_313910041.1 nicotinamide-nucleotide amidohydrolase family protein -
  RDV63_RS13600 (RDV63_13600) mutS 2802368..2804941 (+) 2574 WP_313910042.1 DNA mismatch repair protein MutS -
  RDV63_RS13605 (RDV63_13605) - 2804938..2806113 (+) 1176 WP_313910043.1 benzoate/H(+) symporter BenE family transporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36882.23 Da        Isoelectric Point: 5.5236

>NTDB_id=884829 RDV63_RS13590 WP_313910040.1 2800741..2801775(-) (recA) [Rheinheimera sp. MMS21-TC3]
MNDNKQKALDAALGQIERQFGKGSIMRLGDSTALDIAAVSTGSIGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKDGKTCAFIDAEHALDPVYAKKLGVNVEDLLVSQPDTGEQALEICDMLVRSAAVDIVIVDSVAALTPKAEIEGDMGD
SHMGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKDGDEITGNE
TRVKVVKNKVAPPFKQAEFIIQYGSGINKHGEIVDLGVAEGLVDKAGAWYAHKGNKIGQGKANAIRYLQENPSVSDEIEA
ELRKRLLLKPGDKPTEPLAETEAE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=884829 RDV63_RS13590 WP_313910040.1 2800741..2801775(-) (recA) [Rheinheimera sp. MMS21-TC3]
ATGAACGACAATAAACAAAAAGCGCTTGATGCCGCCTTAGGGCAAATTGAACGTCAGTTTGGCAAAGGCTCTATTATGCG
TCTTGGTGATAGTACAGCACTAGACATTGCTGCAGTATCAACAGGCTCAATAGGCTTAGATATTGCTCTGGGTATAGGTG
GGTTACCTTATGGTCGGATCGTTGAAATTTATGGCCCAGAGTCATCGGGTAAAACTACCTTAACATTACAAGTTATAGCT
GAAGCACAAAAAGATGGTAAAACTTGTGCTTTTATAGATGCAGAGCATGCCTTAGATCCTGTTTATGCTAAAAAGCTAGG
TGTAAATGTAGAAGACTTATTAGTTTCGCAACCTGATACTGGTGAGCAAGCATTAGAGATATGCGATATGCTAGTTCGCT
CAGCCGCAGTTGATATTGTAATTGTTGACTCAGTTGCAGCCTTAACACCTAAAGCAGAAATTGAAGGTGATATGGGCGAC
AGCCATATGGGCTTACAAGCGCGCTTAATGTCACAAGCCTTACGTAAACTTACTGGTAATATTAAACGCTCTAACACTTT
AGTTATTTTCATCAACCAAATCCGGATGAAAATAGGTGTGATGTTTGGTAATCCTGAAACCACTACTGGCGGTAATGCAT
TAAAATTTTATGCTTCAGTACGTTTAGATATTCGCCGTATTGGTTCAGTAAAAGATGGTGACGAAATAACCGGTAACGAA
ACACGGGTTAAAGTGGTTAAGAACAAAGTAGCGCCACCCTTTAAACAAGCTGAGTTTATTATCCAATATGGTTCAGGCAT
TAATAAGCACGGTGAAATTGTTGATTTAGGTGTAGCTGAAGGCTTAGTAGATAAAGCCGGTGCTTGGTATGCCCATAAAG
GGAATAAAATTGGTCAGGGTAAAGCCAATGCTATTCGCTACTTACAAGAAAATCCAAGTGTTTCTGATGAAATAGAAGCT
GAATTGCGCAAGCGTTTATTATTAAAACCAGGCGATAAGCCAACAGAGCCATTAGCCGAGACCGAAGCAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75

100

0.75
  recA Acinetobacter baylyi ADP1

74.709

100

0.747
  recA Acinetobacter baumannii D1279779

74.924

95.058

0.712
  recA Vibrio cholerae strain A1552

74.312

95.058

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

95.058

0.706
  recA Glaesserella parasuis strain SC1401

73.78

95.349

0.703
  recA Neisseria gonorrhoeae MS11

70.679

94.186

0.666
  recA Neisseria gonorrhoeae MS11

70.679

94.186

0.666
  recA Neisseria gonorrhoeae strain FA1090

70.679

94.186

0.666
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.57

0.654
  recA Helicobacter pylori 26695

61.383

100

0.619
  recA Helicobacter pylori strain NCTC11637

61.383

100

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

95.058

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

93.605

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

99.419

0.596
  recA Streptococcus mutans UA159

57.184

100

0.578
  recA Streptococcus pneumoniae D39

59.226

97.674

0.578
  recA Streptococcus pneumoniae Rx1

59.226

97.674

0.578
  recA Streptococcus pneumoniae R6

59.226

97.674

0.578
  recA Streptococcus pneumoniae TIGR4

59.226

97.674

0.578
  recA Streptococcus mitis NCTC 12261

58.929

97.674

0.576
  recA Streptococcus mitis SK321

58.929

97.674

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

94.186

0.576
  recA Streptococcus pyogenes NZ131

58.788

95.93

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561