Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | Q9J89_RS02670 | Genome accession | NZ_CP135051 |
| Coordinates | 555447..556493 (-) | Length | 348 a.a. |
| NCBI ID | WP_002451246.1 | Uniprot ID | A0A2T4Q2T6 |
| Organism | Staphylococcus warneri strain TWSL_1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 552623..626784 | 555447..556493 | within | 0 |
Gene organization within MGE regions
Location: 552623..626784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9J89_RS02660 | - | 553104..553319 (+) | 216 | WP_002467042.1 | hypothetical protein | - |
| Q9J89_RS02665 | rny | 553441..555000 (-) | 1560 | WP_015365062.1 | ribonuclease Y | - |
| Q9J89_RS02670 | recA | 555447..556493 (-) | 1047 | WP_002451246.1 | recombinase RecA | Machinery gene |
| Q9J89_RS02675 | - | 556660..557811 (-) | 1152 | WP_058709395.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| Q9J89_RS02680 | pgsA | 557984..558559 (-) | 576 | WP_015365063.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| Q9J89_RS02685 | - | 558590..558982 (-) | 393 | WP_002465806.1 | RodZ family helix-turn-helix domain-containing protein | - |
| Q9J89_RS02690 | - | 559003..559839 (-) | 837 | WP_015365064.1 | YmfK family protein | - |
| Q9J89_RS02695 | - | 559974..560678 (-) | 705 | WP_002465810.1 | SDR family oxidoreductase | - |
| Q9J89_RS02700 | - | 560675..561964 (-) | 1290 | WP_119547862.1 | pitrilysin family protein | - |
| Q9J89_RS02705 | - | 561964..563235 (-) | 1272 | WP_107532061.1 | pitrilysin family protein | - |
| Q9J89_RS02710 | - | 563263..563976 (-) | 714 | WP_058709396.1 | GntR family transcriptional regulator | - |
| Q9J89_RS02715 | - | 563979..566375 (-) | 2397 | WP_058709397.1 | DNA translocase FtsK | - |
| Q9J89_RS02720 | - | 566611..568284 (-) | 1674 | WP_015365069.1 | ribonuclease J | - |
| Q9J89_RS02725 | pnp | 568471..570570 (-) | 2100 | WP_313795196.1 | polyribonucleotide nucleotidyltransferase | - |
| Q9J89_RS02730 | rpsO | 570706..570975 (-) | 270 | WP_002450539.1 | 30S ribosomal protein S15 | - |
| Q9J89_RS02735 | ribF | 571089..572060 (-) | 972 | WP_058709400.1 | riboflavin biosynthesis protein RibF | - |
| Q9J89_RS02740 | truB | 572073..572990 (-) | 918 | WP_107529193.1 | tRNA pseudouridine(55) synthase TruB | - |
| Q9J89_RS02745 | rbfA | 573143..573493 (-) | 351 | WP_002466047.1 | 30S ribosome-binding factor RbfA | - |
| Q9J89_RS02750 | infB | 573633..575798 (-) | 2166 | WP_058709402.1 | translation initiation factor IF-2 | - |
| Q9J89_RS02755 | - | 575803..576120 (-) | 318 | WP_058709403.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| Q9J89_RS02760 | rnpM | 576117..576404 (-) | 288 | WP_002450545.1 | RNase P modulator RnpM | - |
| Q9J89_RS02765 | nusA | 576424..577656 (-) | 1233 | WP_015365073.1 | transcription termination factor NusA | - |
| Q9J89_RS02770 | rimP | 577677..578144 (-) | 468 | WP_058709404.1 | ribosome maturation factor RimP | - |
| Q9J89_RS02775 | - | 578326..582636 (-) | 4311 | WP_107529198.1 | PolC-type DNA polymerase III | - |
| Q9J89_RS02780 | - | 582904..584607 (-) | 1704 | WP_119547525.1 | proline--tRNA ligase | - |
| Q9J89_RS02785 | rseP | 584627..585913 (-) | 1287 | WP_119547523.1 | RIP metalloprotease RseP | - |
| Q9J89_RS02790 | - | 586156..586938 (-) | 783 | WP_002466065.1 | phosphatidate cytidylyltransferase | - |
| Q9J89_RS02795 | - | 586942..587712 (-) | 771 | WP_002466060.1 | isoprenyl transferase | - |
| Q9J89_RS02800 | frr | 587945..588499 (-) | 555 | WP_002450553.1 | ribosome recycling factor | - |
| Q9J89_RS02805 | pyrH | 588515..589237 (-) | 723 | WP_002450554.1 | UMP kinase | - |
| Q9J89_RS02810 | tsf | 589378..590256 (-) | 879 | WP_058709409.1 | translation elongation factor Ts | - |
| Q9J89_RS02815 | rpsB | 590408..591196 (-) | 789 | WP_002466032.1 | 30S ribosomal protein S2 | - |
| Q9J89_RS02820 | codY | 591503..592276 (-) | 774 | WP_002450557.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| Q9J89_RS02825 | hslU | 592300..593703 (-) | 1404 | WP_119547521.1 | ATP-dependent protease ATPase subunit HslU | - |
| Q9J89_RS02830 | hslV | 593792..594337 (-) | 546 | WP_002450559.1 | ATP-dependent protease subunit HslV | - |
| Q9J89_RS02835 | xerC | 594334..595227 (-) | 894 | WP_058709410.1 | tyrosine recombinase XerC | - |
| Q9J89_RS02840 | trmFO | 595392..596699 (-) | 1308 | WP_002466058.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| Q9J89_RS02845 | topA | 596816..598891 (-) | 2076 | WP_182477606.1 | type I DNA topoisomerase | - |
| Q9J89_RS02850 | dprA | 599069..599938 (-) | 870 | WP_107529190.1 | DNA-processing protein DprA | Machinery gene |
| Q9J89_RS02855 | sucD | 600178..601083 (-) | 906 | WP_002466045.1 | succinate--CoA ligase subunit alpha | - |
| Q9J89_RS02860 | sucC | 601105..602271 (-) | 1167 | WP_002466034.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| Q9J89_RS02865 | - | 602379..603149 (-) | 771 | WP_058709438.1 | ribonuclease HII | - |
| Q9J89_RS02870 | ylqF | 603142..604017 (-) | 876 | WP_058709412.1 | ribosome biogenesis GTPase YlqF | - |
| Q9J89_RS02875 | - | 604317..606917 (+) | 2601 | WP_313795197.1 | YfhO family protein | - |
| Q9J89_RS02880 | - | 606910..609519 (+) | 2610 | WP_058709414.1 | YfhO family protein | - |
| Q9J89_RS02885 | rplS | 609685..610035 (-) | 351 | WP_002450570.1 | 50S ribosomal protein L19 | - |
| Q9J89_RS02890 | trmD | 610141..610878 (-) | 738 | WP_002466037.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| Q9J89_RS02895 | rimM | 610878..611381 (-) | 504 | WP_058709415.1 | ribosome maturation factor RimM | - |
| Q9J89_RS02900 | rpsP | 611549..611824 (-) | 276 | WP_023375169.1 | 30S ribosomal protein S16 | - |
| Q9J89_RS02905 | ffh | 612478..613845 (-) | 1368 | WP_002450574.1 | signal recognition particle protein | - |
| Q9J89_RS02910 | - | 613870..614202 (-) | 333 | WP_002466066.1 | putative DNA-binding protein | - |
| Q9J89_RS02915 | ftsY | 614189..615433 (-) | 1245 | WP_058709416.1 | signal recognition particle-docking protein FtsY | - |
| Q9J89_RS02920 | smc | 615430..618999 (-) | 3570 | WP_313795198.1 | chromosome segregation protein SMC | - |
| Q9J89_RS02925 | rnc | 619152..619880 (-) | 729 | WP_015365085.1 | ribonuclease III | - |
| Q9J89_RS02930 | - | 619991..620224 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| Q9J89_RS02935 | fabG | 620533..621267 (-) | 735 | WP_119547434.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| Q9J89_RS02940 | fabD | 621267..622187 (-) | 921 | WP_119547432.1 | ACP S-malonyltransferase | - |
| Q9J89_RS02945 | plsX | 622180..623166 (-) | 987 | WP_015365088.1 | phosphate acyltransferase PlsX | - |
| Q9J89_RS02950 | fapR | 623159..623728 (-) | 570 | WP_058709419.1 | transcription factor FapR | - |
| Q9J89_RS02955 | recG | 623878..625926 (-) | 2049 | WP_058709420.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37828.74 Da Isoelectric Point: 5.0133
>NTDB_id=884543 Q9J89_RS02670 WP_002451246.1 555447..556493(-) (recA) [Staphylococcus warneri strain TWSL_1]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=884543 Q9J89_RS02670 WP_002451246.1 555447..556493(-) (recA) [Staphylococcus warneri strain TWSL_1]
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAGCTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAGCTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.