Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ViNHUV68_RS12335 Genome accession   NZ_CP134975
Coordinates   2696239..2697285 (-) Length   348 a.a.
NCBI ID   WP_038175350.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2691239..2702285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS12315 (ViNHUV68_24850) csrA 2691313..2691510 (-) 198 WP_038175355.1 carbon storage regulator CsrA -
  ViNHUV68_RS12320 (ViNHUV68_24860) - 2691603..2692790 (-) 1188 WP_391088352.1 aspartate kinase -
  ViNHUV68_RS12325 (ViNHUV68_24870) alaS 2692982..2695564 (-) 2583 WP_391088354.1 alanine--tRNA ligase -
  ViNHUV68_RS12330 (ViNHUV68_24880) recX 2695707..2696171 (-) 465 WP_391088356.1 recombination regulator RecX -
  ViNHUV68_RS12335 (ViNHUV68_24890) recA 2696239..2697285 (-) 1047 WP_038175350.1 recombinase RecA Machinery gene
  ViNHUV68_RS12340 (ViNHUV68_24900) - 2697480..2697959 (-) 480 WP_391088358.1 nicotinamide-nucleotide amidohydrolase family protein -
  ViNHUV68_RS12345 (ViNHUV68_24910) - 2698103..2699629 (+) 1527 WP_391088360.1 diguanylate cyclase domain-containing protein -
  ViNHUV68_RS12350 (ViNHUV68_24920) mutS 2699724..2702285 (+) 2562 WP_391088362.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37402.01 Da        Isoelectric Point: 5.5558

>NTDB_id=884392 ViNHUV68_RS12335 WP_038175350.1 2696239..2697285(-) (recA) [Vibrio sp. NH-UV-68]
MNENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANAGKYLRENPAAAQAIDA
KLREMLLAPVEVKSDDAELGKMPEQEEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=884392 ViNHUV68_RS12335 WP_038175350.1 2696239..2697285(-) (recA) [Vibrio sp. NH-UV-68]
ATGAACGAGAACAAACAGAAAGCGCTTGCCGCTGCGCTAGGTCAGATTGAAAAGCAATTCGGCAAAGGCTCAATTATGCG
CCTTGGCGACAACCGCACAATGGACGTAGAGACTATTTCTACAGGCTCTCTTTCTCTTGATATTGCACTGGGTGCTGGCG
GCCTTCCTATGGGGCGTATTGTTGAGGTTTATGGCCCTGAGTCTTCAGGTAAAACAACCTTAACGCTAGAACTGATTGCT
GCCGCTCAACGTGTCGGTAAAACCTGTGCCTTCATTGATGCTGAACACGCGCTTGATCCTATTTATGCGAAGAAACTGGG
TGTTGATATTGACGCGCTACTTGTATCTCAACCAGATACTGGCGAGCAAGCACTTGAAATCTGTGACGCGTTAGCGCGAT
CAGGTGCGATTGATGTCATGGTCATTGACTCTGTGGCAGCATTGACCCCGAAAGCCGAAATCGAAGGTGAAATGGGTGAT
AGCCACATGGGGTTGCAGGCTCGTATGCTTTCTCAAGCAATGCGTAAGTTAACGGGTAACCTCAAGCAGTCTAACTGTAT
GTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACGACAACGGGTGGTAATGCGC
TTAAGTTTTATGCTTCAGTTCGCCTTGATATTCGTCGTACTGGTTCTATCAAAGATGGTGACGAAGTTGTGGGCAATGAA
ACTCGCATCAAAGTGGTTAAGAACAAGATCGCAGCGCCATTTAAACAGGCAGAGACACAAATTCTTTATGGCCAAGGCTT
CAACCGTGAAGGTGAGCTAATCGACTTAGGCGTGAAGCATAAGCTGGTCGAAAAAGCGGGTGCTTGGTATAGCTACAACG
GTGACAAAATTGGTCAGGGTAAAGCTAACGCTGGCAAGTATCTCCGTGAAAATCCAGCGGCTGCACAAGCCATTGATGCC
AAGTTACGTGAAATGTTGCTTGCACCAGTTGAAGTTAAGTCTGACGATGCAGAACTTGGCAAAATGCCAGAGCAAGAAGA
GTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.969

100

0.882
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.969

100

0.882
  recA Pseudomonas stutzeri DSM 10701

74.924

93.966

0.704
  recA Acinetobacter baylyi ADP1

73.7

93.966

0.693
  recA Acinetobacter baumannii D1279779

73.7

93.966

0.693
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae strain FA1090

65.805

100

0.658
  recA Glaesserella parasuis strain SC1401

69.753

93.103

0.649
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.368

0.641
  recA Streptococcus pneumoniae Rx1

58.571

100

0.589
  recA Streptococcus pneumoniae TIGR4

58.571

100

0.589
  recA Streptococcus pneumoniae R6

58.571

100

0.589
  recA Streptococcus pneumoniae D39

58.571

100

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

91.667

0.575
  recA Helicobacter pylori 26695

61.162

93.966

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

95.69

0.572
  recA Helicobacter pylori strain NCTC11637

60.856

93.966

0.572
  recA Streptococcus mitis SK321

60.372

92.816

0.56
  recA Streptococcus mitis NCTC 12261

60.372

92.816

0.56
  recA Streptococcus pyogenes NZ131

59.633

93.966

0.56
  recA Streptococcus mutans UA159

59.633

93.966

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.199

91.092

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.241

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.816

0.549