Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RKE25_RS15395 Genome accession   NZ_CP134867
Coordinates   3514862..3515896 (-) Length   344 a.a.
NCBI ID   WP_311838974.1    Uniprot ID   A0AA96EC98
Organism   Dyella sp. BiH032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3509862..3520896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE25_RS15380 (RKE25_15380) csrA 3511077..3511280 (-) 204 WP_311838971.1 carbon storage regulator CsrA -
  RKE25_RS15385 (RKE25_15385) alaS 3511541..3514177 (-) 2637 WP_311838972.1 alanine--tRNA ligase -
  RKE25_RS15390 (RKE25_15390) - 3514254..3514748 (-) 495 WP_311838973.1 regulatory protein RecX -
  RKE25_RS15395 (RKE25_15395) recA 3514862..3515896 (-) 1035 WP_311838974.1 recombinase RecA Machinery gene
  RKE25_RS15400 (RKE25_15400) - 3516032..3516541 (-) 510 WP_311838975.1 CinA family protein -
  RKE25_RS15405 (RKE25_15405) - 3516668..3519061 (-) 2394 WP_311838976.1 TonB-dependent receptor -
  RKE25_RS15410 (RKE25_15410) - 3519180..3520151 (-) 972 WP_311838977.1 FecR domain-containing protein -
  RKE25_RS15415 (RKE25_15415) - 3520151..3520693 (-) 543 WP_311842406.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36721.86 Da        Isoelectric Point: 5.3334

>NTDB_id=884206 RKE25_RS15395 WP_311838974.1 3514862..3515896(-) (recA) [Dyella sp. BiH032]
MDDNKRKALASALGQIEKQFGKGAVMRMGDRTDDAIDTVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA
NCQKNGGTAAFVDAEHALDPTYAAKLGVNVDDLLVSQPDTGEQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKKGEEVIGSE
TRVKVVKNKVAPPFRQAEFEILYGEGSSREGEIIELGVAQNLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPAIANEIDQ
ELRARLLVGGGKAAAASEEVLEEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=884206 RKE25_RS15395 WP_311838974.1 3514862..3515896(-) (recA) [Dyella sp. BiH032]
ATGGATGACAACAAGCGCAAGGCGCTCGCCTCGGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCGCACGGACGACGCCATCGACACCGTGTCCACCGGTTCGCTGGGCCTGGACATCGCGCTCGGCGTGGGCG
GCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGTGATCGCC
AACTGCCAGAAGAACGGCGGCACCGCGGCTTTCGTCGACGCCGAGCACGCGCTGGACCCGACCTACGCCGCCAAGCTGGG
CGTGAACGTGGACGACCTGCTGGTCTCCCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CCGGTGCGGTGGACGTGGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCGGAAATCGAAGGCGAGATGGGCGAC
TCCCACGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAATATCAAGAAGTCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACCACCACCGGCGGCAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGAGGAAGTGATCGGCTCGGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCCGCCAGGCCGAGTTCGAGATCCTGTACGGCGAGGGCAG
CTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTGGCGCAGAACCTGATCGACAAGTCCGGCGCCTGGTACAGCTACAAGG
GTGACCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAACCCGGCCATCGCCAACGAGATCGACCAG
GAACTGCGTGCGCGCCTGCTGGTGGGCGGCGGCAAAGCCGCGGCGGCCTCCGAAGAAGTGCTCGAAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.878

95.349

0.762
  recA Ralstonia pseudosolanacearum GMI1000

71.591

100

0.733
  recA Acinetobacter baylyi ADP1

73.178

99.709

0.73
  recA Acinetobacter baumannii D1279779

71.681

98.547

0.706
  recA Neisseria gonorrhoeae strain FA1090

74.462

94.477

0.703
  recA Neisseria gonorrhoeae MS11

74.462

94.477

0.703
  recA Neisseria gonorrhoeae MS11

74.462

94.477

0.703
  recA Vibrio cholerae strain A1552

73.089

95.058

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

95.058

0.695
  recA Glaesserella parasuis strain SC1401

71.914

94.186

0.677
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

98.837

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

96.221

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

66.562

93.023

0.619
  recA Helicobacter pylori strain NCTC11637

64.506

94.186

0.608
  recA Helicobacter pylori 26695

64.198

94.186

0.605
  recA Streptococcus mutans UA159

62.997

95.058

0.599
  recA Streptococcus mitis NCTC 12261

59.882

98.547

0.59
  recA Streptococcus mitis SK321

59.882

98.547

0.59
  recA Streptococcus pyogenes NZ131

61.89

95.349

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

63.043

93.605

0.59
  recA Streptococcus pneumoniae Rx1

61.043

94.767

0.578
  recA Streptococcus pneumoniae D39

61.043

94.767

0.578
  recA Streptococcus pneumoniae R6

61.043

94.767

0.578
  recA Streptococcus pneumoniae TIGR4

61.043

94.767

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

94.186

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.642

94.186

0.552