Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M9H35_RS07250 Genome accession   NZ_CP134823
Coordinates   1478268..1479320 (-) Length   350 a.a.
NCBI ID   WP_049390989.1    Uniprot ID   -
Organism   Staphylococcus capitis strain ADJXA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1473268..1484320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H35_RS07235 (M9H35_07235) - 1475095..1475889 (-) 795 WP_002453118.1 TIGR00282 family metallophosphoesterase -
  M9H35_RS07240 (M9H35_07240) - 1476052..1476267 (+) 216 WP_002453117.1 hypothetical protein -
  M9H35_RS07245 (M9H35_07245) rny 1476474..1478033 (-) 1560 WP_049388891.1 ribonuclease Y -
  M9H35_RS07250 (M9H35_07250) recA 1478268..1479320 (-) 1053 WP_049390989.1 recombinase RecA Machinery gene
  M9H35_RS07255 (M9H35_07255) - 1479489..1480637 (-) 1149 WP_002453114.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  M9H35_RS07260 (M9H35_07260) pgsA 1480779..1481360 (-) 582 WP_002453113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M9H35_RS07265 (M9H35_07265) - 1481388..1481780 (-) 393 WP_016898116.1 helix-turn-helix domain-containing protein -
  M9H35_RS07270 (M9H35_07270) - 1481799..1482626 (-) 828 WP_016898115.1 YmfK family protein -
  M9H35_RS07275 (M9H35_07275) ymfI 1482808..1483515 (-) 708 WP_002453110.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38001.91 Da        Isoelectric Point: 4.9318

>NTDB_id=883907 M9H35_RS07250 WP_049390989.1 1478268..1479320(-) (recA) [Staphylococcus capitis strain ADJXA]
MDNERQKALDTVIKNMEKSFGKGTVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=883907 M9H35_RS07250 WP_049390989.1 1478268..1479320(-) (recA) [Staphylococcus capitis strain ADJXA]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTACGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.143

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

93.714

0.669
  recA Streptococcus pneumoniae TIGR4

64.011

100

0.666
  recA Streptococcus pneumoniae Rx1

64.011

100

0.666
  recA Streptococcus pneumoniae D39

64.011

100

0.666
  recA Streptococcus pneumoniae R6

64.011

100

0.666
  recA Streptococcus mitis NCTC 12261

64.489

100

0.649
  recA Streptococcus mutans UA159

63.408

100

0.649
  recA Streptococcus pyogenes NZ131

68.693

94

0.646
  recA Acinetobacter baumannii D1279779

64

100

0.64
  recA Acinetobacter baylyi ADP1

63.977

99.143

0.634
  recA Streptococcus mitis SK321

66.366

95.143

0.631
  recA Neisseria gonorrhoeae MS11

63.953

98.286

0.629
  recA Neisseria gonorrhoeae MS11

63.953

98.286

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.953

98.286

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.571

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94

0.62
  recA Helicobacter pylori 26695

64.939

93.714

0.609
  recA Vibrio cholerae strain A1552

65.031

93.143

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.143

0.606
  recA Helicobacter pylori strain NCTC11637

64.634

93.714

0.606
  recA Pseudomonas stutzeri DSM 10701

59.531

97.429

0.58
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.429

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.571

0.577
  recA Glaesserella parasuis strain SC1401

57.714

100

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.143

0.56