Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MPHASIOC01_RS15610 Genome accession   NZ_CP134782
Coordinates   3227678..3228742 (-) Length   354 a.a.
NCBI ID   WP_064600886.1    Uniprot ID   A0A1B7KZ30
Organism   Mangrovibacter phragmitis strain ASIOC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3222678..3233742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPHASIOC01_RS15595 (MPHASIOC01_003103) csrA 3223590..3223775 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  MPHASIOC01_RS15600 (MPHASIOC01_003104) alaS 3224009..3226636 (-) 2628 WP_064600884.1 alanine--tRNA ligase -
  MPHASIOC01_RS15605 (MPHASIOC01_003105) - 3226794..3227237 (-) 444 WP_082917932.1 regulatory protein RecX -
  MPHASIOC01_RS15610 (MPHASIOC01_003106) recA 3227678..3228742 (-) 1065 WP_064600886.1 recombinase RecA Machinery gene
  MPHASIOC01_RS15615 (MPHASIOC01_003107) pncC 3228840..3229337 (-) 498 WP_064601025.1 nicotinamide-nucleotide amidase -
  MPHASIOC01_RS15620 (MPHASIOC01_003108) mltB 3229486..3230571 (-) 1086 WP_353612889.1 lytic murein transglycosylase B -
  MPHASIOC01_RS15625 (MPHASIOC01_003109) - 3231022..3231536 (+) 515 Protein_3074 DUF2778 domain-containing protein -
  MPHASIOC01_RS15630 (MPHASIOC01_003110) - 3231517..3231786 (+) 270 WP_353612890.1 hypothetical protein -
  MPHASIOC01_RS15635 (MPHASIOC01_003111) - 3231801..3232283 (-) 483 WP_064600890.1 type VI secretion system tube protein TssD -
  MPHASIOC01_RS15640 (MPHASIOC01_003112) - 3232643..3233191 (+) 549 WP_353612891.1 PTS glucitol/sorbitol transporter subunit IIC -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38118.38 Da        Isoelectric Point: 4.8067

>NTDB_id=883693 MPHASIOC01_RS15610 WP_064600886.1 3227678..3228742(-) (recA) [Mangrovibacter phragmitis strain ASIOC01]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANATSYLKENEAVAKVI
ESKLREMLLNNQDSTPDFSADETEDHADNAQEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=883693 MPHASIOC01_RS15610 WP_064600886.1 3227678..3228742(-) (recA) [Mangrovibacter phragmitis strain ASIOC01]
ATGGCTATCGACGAAAACAAGCAAAAAGCGTTGGCGGCAGCACTGGGCCAAATTGAAAAACAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCACTATGGATGTGGAAACGATCTCCACCGGTTCACTCTCCCTGGATATCGCTCTGGGTG
CAGGTGGCTTGCCGATGGGCCGTATCGTAGAGATCTATGGGCCGGAATCCTCAGGTAAAACAACACTGACACTGCAGGTT
ATTGCTGCCGCACAGCGTGAAGGTAAAACCTGTGCGTTCATTGATGCGGAGCATGCCCTTGATCCTGTTTATGCCCGTAA
ACTGGGTGTTGATATTGATAACCTGCTGTGTTCACAGCCGGATACTGGCGAACAGGCTCTGGAAATTTGTGATGCACTGG
CGCGTTCTGGCGCTGTCGATGTTCTTGTTGTTGACTCCGTTGCAGCACTGACACCAAAAGCTGAAATTGAAGGCGAAATC
GGTGATTCGCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCAATGCGTAAGCTTGCCGGTAACCTGAAACAGTCCAA
TACGCTGCTTATTTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCGGAAACCACTACGGGTGGTA
ACGCACTGAAGTTCTATGCCTCTGTTCGCCTGGACATCCGCCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGG
AGTGAAACCCGCGTTAAGGTTGTGAAAAATAAAGTTGCCGCACCGTTTAAACAGGCTGAGTTCCAGATTCTCTACGGTGA
AGGTATTAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAGCATAAGCTTATTGAAAAAGCCGGTGCATGGTACAGCT
ACAATGGTGACAAAATTGGCCAGGGTAAAGCAAACGCCACCAGCTACCTGAAAGAGAATGAAGCCGTTGCCAAAGTGATT
GAAAGCAAGCTGCGTGAAATGCTGCTCAATAACCAGGATAGCACGCCTGATTTCTCTGCTGATGAAACAGAAGACCATGC
AGACAACGCGCAGGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7KZ30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

93.503

0.794
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

93.503

0.794
  recA Pseudomonas stutzeri DSM 10701

73.887

95.198

0.703
  recA Acinetobacter baylyi ADP1

71.676

97.74

0.701
  recA Acinetobacter baumannii D1279779

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

68.857

98.87

0.681
  recA Neisseria gonorrhoeae MS11

68.405

92.09

0.63
  recA Neisseria gonorrhoeae MS11

68.405

92.09

0.63
  recA Neisseria gonorrhoeae strain FA1090

68.405

92.09

0.63
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Streptococcus mutans UA159

58.807

99.435

0.585
  recA Helicobacter pylori strain NCTC11637

61.424

95.198

0.585
  recA Helicobacter pylori 26695

61.128

95.198

0.582
  recA Streptococcus pneumoniae D39

58.357

99.718

0.582
  recA Streptococcus pneumoniae TIGR4

58.357

99.718

0.582
  recA Streptococcus pneumoniae Rx1

58.357

99.718

0.582
  recA Streptococcus pneumoniae R6

58.357

99.718

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.243

0.571
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.846

91.808

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.755

90.113

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.678

0.548