Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RJD25_RS09725 Genome accession   NZ_CP134696
Coordinates   2730777..2731841 (+) Length   354 a.a.
NCBI ID   WP_311586935.1    Uniprot ID   -
Organism   Pontibacter sp. G13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2725777..2736841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD25_RS09710 (RJD25_09710) - 2728206..2728976 (-) 771 WP_311586932.1 alpha/beta hydrolase -
  RJD25_RS09715 (RJD25_09715) - 2729304..2729678 (+) 375 WP_311586933.1 co-chaperone GroES family protein -
  RJD25_RS09720 (RJD25_09720) - 2729873..2730565 (+) 693 WP_311586934.1 peptidylprolyl isomerase -
  RJD25_RS09725 (RJD25_09725) recA 2730777..2731841 (+) 1065 WP_311586935.1 recombinase RecA Machinery gene
  RJD25_RS09730 (RJD25_09730) - 2731948..2732418 (-) 471 WP_311586936.1 hypothetical protein -
  RJD25_RS09735 (RJD25_09735) floA 2732405..2733427 (-) 1023 WP_311586937.1 flotillin-like protein FloA -
  RJD25_RS09740 (RJD25_09740) - 2733849..2734628 (-) 780 WP_311586938.1 enoyl-CoA hydratase-related protein -
  RJD25_RS09745 (RJD25_09745) - 2734735..2735175 (-) 441 WP_311586939.1 MarR family transcriptional regulator -
  RJD25_RS09750 (RJD25_09750) - 2735839..2736291 (-) 453 WP_311586941.1 transcriptional regulator, SarA/Rot family -
  RJD25_RS09755 (RJD25_09755) - 2736369..2736824 (-) 456 WP_311586943.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38383.24 Da        Isoelectric Point: 7.8922

>NTDB_id=882961 RJD25_RS09725 WP_311586935.1 2730777..2731841(+) (recA) [Pontibacter sp. G13]
MSKEKNLEKLKSLQTTMDKLEKTYGKGIVMKLSDNAVEDVPALSTGSLSLDIALGIGGIPRGRIVEIYGPESSGKTTLAM
HTIAQAQKAGGLAAFIDAEHAFDRVYAEKLGIDVESLYVSQPDYGEQALEIAEYLIRSGAIDILVIDSVAALTPKAEIEG
EMGDSKMGLQARLMSQALRKLTAAISKTNCVCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRTAQIKEGTDS
IGNRVKVKVVKNKVSPPFKIAEFDVMFGEGISHAGEVLDLAVELDIVHKAGSWFSYDGSKLGQGRDSVKKLIRDNPELME
EIEHKVLVKKGIRSEEAPKEDKAKANGKPAKAKS

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=882961 RJD25_RS09725 WP_311586935.1 2730777..2731841(+) (recA) [Pontibacter sp. G13]
ATGTCAAAAGAAAAAAATTTAGAGAAGCTGAAATCCCTCCAGACCACTATGGACAAACTGGAGAAGACCTATGGAAAAGG
TATTGTCATGAAGCTCAGCGACAACGCTGTGGAAGACGTACCTGCTCTTTCTACAGGTTCACTCAGCCTGGATATAGCCT
TGGGAATTGGCGGAATCCCCCGCGGCCGAATCGTGGAAATCTACGGACCCGAGTCCTCTGGTAAAACCACCTTGGCCATG
CATACAATCGCTCAAGCCCAGAAAGCCGGTGGCCTCGCTGCATTCATCGATGCCGAACATGCTTTTGACCGTGTATATGC
AGAAAAATTGGGAATTGATGTAGAGAGCCTCTACGTATCCCAACCTGATTATGGTGAGCAGGCGCTCGAAATTGCCGAGT
ACTTGATTCGCTCTGGTGCCATCGACATTCTCGTTATTGACTCTGTGGCTGCCTTGACGCCAAAAGCAGAGATTGAAGGC
GAGATGGGAGACTCCAAAATGGGCCTTCAGGCGCGTTTGATGTCTCAGGCATTGAGAAAATTGACTGCGGCCATCTCCAA
AACCAACTGTGTCTGTATCTTCATCAACCAGTTGCGTGAGAAAATCGGGGTGATGTTCGGCAACCCTGAGACCACTACAG
GGGGCAATGCCTTGAAATTCTACTCTTCTGTACGATTGGATATCCGCCGTACTGCCCAAATCAAGGAAGGAACCGATAGC
ATCGGTAACCGCGTCAAAGTCAAAGTTGTCAAGAACAAGGTTTCACCTCCATTCAAGATTGCCGAATTTGACGTGATGTT
TGGTGAAGGCATCTCCCACGCTGGGGAAGTGCTTGACCTTGCGGTTGAATTGGACATCGTCCACAAAGCTGGATCTTGGT
TCTCCTACGACGGGAGCAAGCTTGGCCAGGGGCGCGACAGCGTCAAAAAGTTGATCCGAGACAACCCTGAATTGATGGAA
GAGATCGAGCACAAGGTTTTGGTCAAAAAAGGCATTCGTTCGGAAGAAGCTCCCAAAGAAGATAAAGCCAAGGCAAACGG
AAAACCTGCTAAGGCAAAATCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.642

92.373

0.653
  recA Acinetobacter baylyi ADP1

66.032

88.983

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.275

94.35

0.588
  recA Acinetobacter baumannii D1279779

65.094

89.831

0.585
  recA Streptococcus mitis SK321

58.79

98.023

0.576
  recA Neisseria gonorrhoeae strain FA1090

62.577

92.09

0.576
  recA Neisseria gonorrhoeae MS11

62.577

92.09

0.576
  recA Neisseria gonorrhoeae MS11

62.577

92.09

0.576
  recA Streptococcus mitis NCTC 12261

58.382

97.74

0.571
  recA Streptococcus pneumoniae D39

56.742

100

0.571
  recA Streptococcus pneumoniae Rx1

56.742

100

0.571
  recA Streptococcus pneumoniae R6

56.742

100

0.571
  recA Streptococcus pneumoniae TIGR4

56.742

100

0.571
  recA Streptococcus mutans UA159

59.412

96.045

0.571
  recA Helicobacter pylori strain NCTC11637

60.119

94.915

0.571
  recA Ralstonia pseudosolanacearum GMI1000

65.472

86.723

0.568
  recA Helicobacter pylori 26695

59.821

94.915

0.568
  recA Streptococcus pyogenes NZ131

61.28

92.655

0.568
  recA Glaesserella parasuis strain SC1401

62.069

90.113

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

62.857

88.983

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.683

94.35

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.678

0.554
  recA Vibrio cholerae strain A1552

61.635

89.831

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.635

89.831

0.554
  recA Lactococcus lactis subsp. cremoris KW2

57.738

94.915

0.548
  recA Pseudomonas stutzeri DSM 10701

60.436

90.678

0.548