Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIFJ21_RS06475 | Genome accession | NZ_CP134690 |
| Coordinates | 1388650..1389696 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain J2_1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1360279..1437479 | 1388650..1389696 | within | 0 |
Gene organization within MGE regions
Location: 1360279..1437479
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIFJ21_RS06360 (CDIFJ21_12680) | acd | 1360354..1362177 (+) | 1824 | WP_021373393.1 | N-acetylglucosaminidase | - |
| CDIFJ21_RS06365 (CDIFJ21_12690) | - | 1362392..1366690 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| CDIFJ21_RS06370 (CDIFJ21_12700) | rimP | 1366894..1367355 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIFJ21_RS06375 (CDIFJ21_12710) | nusA | 1367385..1368539 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIFJ21_RS06380 (CDIFJ21_12720) | rnpM | 1368546..1368827 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIFJ21_RS06385 (CDIFJ21_12730) | - | 1368817..1369128 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIFJ21_RS06390 (CDIFJ21_12740) | infB | 1369150..1371090 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIFJ21_RS06395 (CDIFJ21_12750) | rbfA | 1371133..1371513 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIFJ21_RS06400 (CDIFJ21_12760) | - | 1371494..1372477 (+) | 984 | WP_003438308.1 | DHH family phosphoesterase | - |
| CDIFJ21_RS06405 (CDIFJ21_12770) | truB | 1372490..1373395 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIFJ21_RS06410 (CDIFJ21_12780) | - | 1373526..1374455 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIFJ21_RS06415 (CDIFJ21_12790) | rpsO | 1374559..1374816 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIFJ21_RS06420 (CDIFJ21_12800) | - | 1375056..1375901 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIFJ21_RS06425 (CDIFJ21_12810) | pnp | 1376026..1378137 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIFJ21_RS06430 (CDIFJ21_12820) | - | 1378403..1379146 (+) | 744 | WP_021373395.1 | polysaccharide deacetylase family protein | - |
| CDIFJ21_RS06435 (CDIFJ21_12830) | - | 1379304..1380551 (+) | 1248 | WP_021373396.1 | M16 family metallopeptidase | - |
| CDIFJ21_RS06440 (CDIFJ21_12840) | - | 1380586..1380831 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIFJ21_RS06445 (CDIFJ21_12850) | dapG | 1380841..1382064 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIFJ21_RS06450 (CDIFJ21_12860) | - | 1382177..1382911 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIFJ21_RS06455 (CDIFJ21_12870) | - | 1383034..1385445 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIFJ21_RS06460 (CDIFJ21_12880) | mnmH | 1385448..1386506 (+) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIFJ21_RS06465 (CDIFJ21_12890) | rimO | 1386500..1387834 (+) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIFJ21_RS06470 (CDIFJ21_12900) | pgsA | 1387821..1388363 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIFJ21_RS06475 (CDIFJ21_12910) | recA | 1388650..1389696 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIFJ21_RS06480 (CDIFJ21_12920) | rny | 1389872..1391413 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIFJ21_RS06485 (CDIFJ21_12930) | - | 1391727..1393217 (+) | 1491 | WP_321570628.1 | cache domain-containing protein | - |
| CDIFJ21_RS19195 (CDIFJ21_12940) | - | 1393266..1394063 (+) | 798 | WP_416795310.1 | diguanylate cyclase | - |
| CDIFJ21_RS06500 (CDIFJ21_12950) | - | 1394445..1396226 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIFJ21_RS06505 (CDIFJ21_12960) | lepB | 1396308..1396838 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIFJ21_RS06510 (CDIFJ21_12970) | - | 1396878..1397702 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIFJ21_RS06515 (CDIFJ21_12980) | - | 1397959..1398867 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIFJ21_RS06520 (CDIFJ21_12990) | purB | 1399011..1400456 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CDIFJ21_RS06525 (CDIFJ21_13000) | - | 1400767..1401219 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIFJ21_RS06530 (CDIFJ21_13010) | - | 1401554..1402750 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIFJ21_RS06535 (CDIFJ21_13020) | galT | 1403135..1404085 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIFJ21_RS06540 (CDIFJ21_13030) | - | 1404246..1404998 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIFJ21_RS06545 (CDIFJ21_13040) | - | 1405090..1405866 (-) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| CDIFJ21_RS06550 (CDIFJ21_13050) | - | 1406181..1408079 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIFJ21_RS06555 (CDIFJ21_13060) | - | 1408207..1409328 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIFJ21_RS06560 (CDIFJ21_13070) | - | 1409527..1409859 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIFJ21_RS06565 (CDIFJ21_13080) | - | 1409846..1410904 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| CDIFJ21_RS06570 (CDIFJ21_13090) | - | 1410897..1411967 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIFJ21_RS06575 (CDIFJ21_13100) | - | 1412069..1412605 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIFJ21_RS06580 (CDIFJ21_13110) | - | 1412721..1413428 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIFJ21_RS06585 (CDIFJ21_13120) | - | 1413430..1414146 (+) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIFJ21_RS06590 (CDIFJ21_13130) | - | 1414148..1414906 (+) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIFJ21_RS06595 (CDIFJ21_13140) | - | 1415090..1416427 (+) | 1338 | WP_235665142.1 | two-component system sensor histidine kinase | - |
| CDIFJ21_RS06600 (CDIFJ21_13150) | - | 1416503..1417324 (-) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| CDIFJ21_RS06605 (CDIFJ21_13160) | - | 1417575..1418729 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIFJ21_RS06610 (CDIFJ21_13170) | - | 1418912..1419112 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIFJ21_RS06615 (CDIFJ21_13180) | - | 1419533..1419961 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIFJ21_RS06620 (CDIFJ21_13190) | - | 1420104..1420859 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIFJ21_RS06625 (CDIFJ21_13210) | - | 1421560..1422066 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIFJ21_RS06630 (CDIFJ21_13220) | - | 1422148..1422468 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIFJ21_RS06635 (CDIFJ21_13230) | - | 1422637..1422834 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIFJ21_RS06640 (CDIFJ21_13240) | - | 1422939..1423379 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIFJ21_RS06645 (CDIFJ21_13250) | - | 1423628..1424071 (+) | 444 | WP_021373399.1 | phage tail terminator family protein | - |
| CDIFJ21_RS06650 (CDIFJ21_13260) | - | 1424076..1425140 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIFJ21_RS06655 (CDIFJ21_13270) | - | 1425154..1425582 (+) | 429 | WP_021373400.1 | phage tail tube protein | - |
| CDIFJ21_RS06660 (CDIFJ21_13280) | - | 1425708..1426154 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIFJ21_RS06665 (CDIFJ21_13290) | - | 1426181..1426348 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIFJ21_RS06670 (CDIFJ21_13300) | - | 1426348..1428801 (+) | 2454 | WP_021373401.1 | hypothetical protein | - |
| CDIFJ21_RS06675 (CDIFJ21_13310) | - | 1428801..1429223 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| CDIFJ21_RS06680 (CDIFJ21_13320) | - | 1429505..1431034 (+) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| CDIFJ21_RS06685 (CDIFJ21_13330) | - | 1431050..1431376 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIFJ21_RS06690 (CDIFJ21_13340) | - | 1431376..1431804 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDIFJ21_RS06695 (CDIFJ21_13350) | - | 1431797..1432828 (+) | 1032 | WP_231309988.1 | baseplate J/gp47 family protein | - |
| CDIFJ21_RS06700 (CDIFJ21_13360) | - | 1432825..1433523 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| CDIFJ21_RS06705 (CDIFJ21_13370) | - | 1433524..1434507 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=882842 CDIFJ21_RS06475 WP_003428218.1 1388650..1389696(+) (recA) [Clostridioides difficile strain J2_1]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=882842 CDIFJ21_RS06475 WP_003428218.1 1388650..1389696(+) (recA) [Clostridioides difficile strain J2_1]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.