Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RIK61_RS19925 Genome accession   NZ_CP134649
Coordinates   4197720..4198778 (-) Length   352 a.a.
NCBI ID   WP_020883855.1    Uniprot ID   A0A839BSZ4
Organism   Enterobacter ludwigii strain 51A:C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4192720..4203778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK61_RS19910 (RIK61_19910) csrA 4193965..4194150 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  RIK61_RS19915 (RIK61_19915) alaS 4194392..4197019 (-) 2628 WP_025203392.1 alanine--tRNA ligase -
  RIK61_RS19920 (RIK61_19920) recX 4197151..4197651 (-) 501 WP_014171334.1 recombination regulator RecX -
  RIK61_RS19925 (RIK61_19925) recA 4197720..4198778 (-) 1059 WP_020883855.1 recombinase RecA Machinery gene
  RIK61_RS19930 (RIK61_19930) pncC 4198868..4199365 (-) 498 WP_020883854.1 nicotinamide-nucleotide amidase -
  RIK61_RS19935 (RIK61_19935) - 4199496..4200374 (-) 879 WP_250369289.1 metal ABC transporter substrate-binding protein -
  RIK61_RS19940 (RIK61_19940) - 4200389..4201249 (-) 861 WP_025203390.1 metal ABC transporter permease -
  RIK61_RS19945 (RIK61_19945) - 4201246..4201899 (-) 654 WP_311382827.1 ATP-binding cassette domain-containing protein -
  RIK61_RS19950 (RIK61_19950) mltB 4202148..4203248 (-) 1101 WP_025203388.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37810.20 Da        Isoelectric Point: 4.8055

>NTDB_id=882638 RIK61_RS19925 WP_020883855.1 4197720..4198778(-) (recA) [Enterobacter ludwigii strain 51A:C]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDGTPDFVVDNAGAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=882638 RIK61_RS19925 WP_020883855.1 4197720..4198778(-) (recA) [Enterobacter ludwigii strain 51A:C]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CTGGCGGCCTGCCAATGGGCCGTATCGTAGAAATCTACGGGCCCGAGTCCTCAGGTAAAACAACCCTGACGCTGCAGGTT
ATCGCTGCGGCACAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCTGTTTATGCTCGTAA
GCTGGGCGTTGATATTGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CCCGTTCCGGTGCGGTTGACGTTATCGTGGTCGACTCCGTTGCTGCTCTGACGCCAAAAGCTGAAATCGAAGGCGAAATT
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCGTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGTGAAAACGTAGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCGCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGTGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGCGACAAGATTGGTCAGGGTAAAGCAAATGCAATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAAATT
GAGAAGAAAGTGCGTGAGCTTCTGCTGAACAACCAGGACGGTACGCCTGATTTCGTGGTGGATAACGCGGGTGCTGAAGA
AACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BSZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

73.887

95.739

0.707
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.391

98.864

0.676
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557