Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHP75_RS14470 Genome accession   NZ_CP134499
Coordinates   3034258..3035301 (-) Length   347 a.a.
NCBI ID   WP_311088804.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3029258..3040301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP75_RS14455 (RHP75_14455) - 3030970..3032373 (+) 1404 WP_311088801.1 MBL fold metallo-hydrolase -
  RHP75_RS14460 (RHP75_14460) - 3032506..3033585 (+) 1080 WP_311088802.1 LOG family protein -
  RHP75_RS14465 (RHP75_14465) recX 3033783..3034247 (-) 465 WP_311088803.1 recombination regulator RecX -
  RHP75_RS14470 (RHP75_14470) recA 3034258..3035301 (-) 1044 WP_311088804.1 recombinase RecA Machinery gene
  RHP75_RS14475 (RHP75_14475) - 3035392..3035904 (-) 513 WP_311088805.1 CinA family protein -
  RHP75_RS14480 (RHP75_14480) mutS 3035983..3038556 (+) 2574 WP_311088806.1 DNA mismatch repair protein MutS -
  RHP75_RS14485 (RHP75_14485) fdxA 3038695..3039018 (+) 324 WP_090248347.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36994.43 Da        Isoelectric Point: 5.5300

>NTDB_id=880572 RHP75_RS14470 WP_311088804.1 3034258..3035301(-) (recA) [Pseudomonas sp. SG20056]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGNKIGQGKANSAKYLEDNPEVARTIEG
LIREKLLVASPTVKANSTADDLADADA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=880572 RHP75_RS14470 WP_311088804.1 3034258..3035301(-) (recA) [Pseudomonas sp. SG20056]
ATGGACGAGAATAAGAAGCGCGCCTTGGCGGCAGCCTTGGGCCAGATTGAAAAGCAATTCGGCAAAGGTGCAGTGATGCG
CATGGGCGATCATGATCGTCAGGCGATCCCGGCCATCTCCACTGGCTCGCTGGGTCTGGACATCGCGCTGGGCATTGGCG
GTCTGCCGAAAGGCCGAATCGTTGAAATCTATGGCCCAGAGTCCTCGGGTAAAACCACCCTGACCCTGTCGGTGATCGCC
GAAGCGCAAAAGCTCGGCGCCACCTGCGCCTTCGTCGATGCTGAGCATGCACTCGACCCGGACTATGCCGGTAAACTCGG
CGTCAATGTCGATGACCTGCTGGTGTCGCAGCCGGATACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTACGCT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCGAAGGCGGAAATCGAAGGCGAAATGGGCGAT
ATGCACGTAGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATTAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTTCGTTTGGATATCCGCCGTACCGGTGCGGTGAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAAGTGGTGAAGAACAAGGTCGCTCCGCCGTTCCGTCAGGCCGAATTCCAGATTCTTTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGACCTCGGCGTGCAGCTCGGTCTGCTGGAAAAATCTGGCGCCTGGTACAGCTACCAAG
GCAACAAGATTGGCCAGGGCAAGGCCAATTCGGCCAAGTACTTGGAAGACAACCCGGAAGTGGCACGCACCATTGAAGGC
TTGATCCGTGAGAAATTGCTGGTGGCCAGCCCGACGGTCAAGGCCAACTCCACGGCCGATGACCTGGCTGACGCCGACGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.908

99.712

0.916
  recA Acinetobacter baylyi ADP1

74.203

99.424

0.738
  recA Acinetobacter baumannii D1279779

76.524

94.524

0.723
  recA Vibrio cholerae strain A1552

72.464

99.424

0.72
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.464

99.424

0.72
  recA Glaesserella parasuis strain SC1401

71.053

98.559

0.7
  recA Ralstonia pseudosolanacearum GMI1000

75.241

89.625

0.674
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae MS11

71.296

93.372

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.372

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.254

0.608
  recA Helicobacter pylori strain NCTC11637

63.609

94.236

0.599
  recA Helicobacter pylori 26695

62.997

94.236

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mitis SK321

56.772

100

0.568
  recA Streptococcus mitis NCTC 12261

56.484

100

0.565
  recA Streptococcus mutans UA159

59.692

93.66

0.559
  recA Streptococcus pyogenes NZ131

58.537

94.524

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.507

0.553
  recA Streptococcus pneumoniae Rx1

58.589

93.948

0.55
  recA Streptococcus pneumoniae D39

58.589

93.948

0.55
  recA Streptococcus pneumoniae R6

58.589

93.948

0.55
  recA Streptococcus pneumoniae TIGR4

58.589

93.948

0.55
  recA Lactococcus lactis subsp. cremoris KW2

56.966

93.084

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.793

94.524

0.527