Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RIU93_RS04705 Genome accession   NZ_CP134464
Coordinates   937200..938246 (+) Length   348 a.a.
NCBI ID   WP_002451246.1    Uniprot ID   A0A2T4Q2T6
Organism   Staphylococcus warneri strain 2023.05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 932200..943246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS04680 (RIU93_04680) ymfI 933015..933719 (+) 705 WP_002465810.1 elongation factor P 5-aminopentanone reductase -
  RIU93_RS04685 (RIU93_04685) - 933854..934690 (+) 837 WP_311095388.1 YmfK family protein -
  RIU93_RS04690 (RIU93_04690) - 934711..935103 (+) 393 WP_002465806.1 RodZ family helix-turn-helix domain-containing protein -
  RIU93_RS04695 (RIU93_04695) pgsA 935134..935709 (+) 576 WP_015365063.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RIU93_RS04700 (RIU93_04700) - 935882..937033 (+) 1152 WP_058709395.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RIU93_RS04705 (RIU93_04705) recA 937200..938246 (+) 1047 WP_002451246.1 recombinase RecA Machinery gene
  RIU93_RS04710 (RIU93_04710) rny 938685..940244 (+) 1560 WP_015365062.1 ribonuclease Y -
  RIU93_RS04715 (RIU93_04715) - 940366..940581 (-) 216 WP_002467042.1 hypothetical protein -
  RIU93_RS04720 (RIU93_04720) - 940744..941535 (+) 792 WP_015365061.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37828.74 Da        Isoelectric Point: 5.0133

>NTDB_id=880057 RIU93_RS04705 WP_002451246.1 937200..938246(+) (recA) [Staphylococcus warneri strain 2023.05]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=880057 RIU93_RS04705 WP_002451246.1 937200..938246(+) (recA) [Staphylococcus warneri strain 2023.05]
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAGCTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.678

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

69.795

97.989

0.684
  recA Streptococcus pneumoniae TIGR4

65.903

100

0.661
  recA Streptococcus pneumoniae Rx1

65.903

100

0.661
  recA Streptococcus pneumoniae D39

65.903

100

0.661
  recA Streptococcus pneumoniae R6

65.903

100

0.661
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mutans UA159

64.857

100

0.652
  recA Streptococcus mitis NCTC 12261

65.507

99.138

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65

97.701

0.635
  recA Streptococcus mitis SK321

66.366

95.69

0.635
  recA Acinetobacter baumannii D1279779

63.218

100

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.115

0.629
  recA Neisseria gonorrhoeae MS11

66.261

94.54

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.261

94.54

0.626
  recA Neisseria gonorrhoeae MS11

66.261

94.54

0.626
  recA Acinetobacter baylyi ADP1

66.564

93.678

0.624
  recA Helicobacter pylori 26695

65.244

94.253

0.615
  recA Helicobacter pylori strain NCTC11637

64.939

94.253

0.612
  recA Ralstonia pseudosolanacearum GMI1000

64.939

94.253

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.678

0.612
  recA Vibrio cholerae strain A1552

65.337

93.678

0.612
  recA Pseudomonas stutzeri DSM 10701

62.883

93.678

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.115

0.578
  recA Glaesserella parasuis strain SC1401

61.728

93.103

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

91.954

0.557