Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RIN58_RS15370 Genome accession   NZ_CP134402
Coordinates   3223205..3224269 (-) Length   354 a.a.
NCBI ID   WP_031523014.1    Uniprot ID   -
Organism   Siccibacter colletis strain 3.2.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3218205..3229269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN58_RS15355 (RIN58_15355) csrA 3219461..3219646 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  RIN58_RS15360 (RIN58_15360) alaS 3219880..3222507 (-) 2628 WP_313796128.1 alanine--tRNA ligase -
  RIN58_RS15365 (RIN58_15365) - 3222647..3223141 (-) 495 WP_313796129.1 regulatory protein RecX -
  RIN58_RS15370 (RIN58_15370) recA 3223205..3224269 (-) 1065 WP_031523014.1 recombinase RecA Machinery gene
  RIN58_RS15375 (RIN58_15375) pncC 3224362..3224859 (-) 498 WP_313796130.1 nicotinamide-nucleotide amidase -
  RIN58_RS15380 (RIN58_15380) mltB 3224965..3226047 (-) 1083 WP_313796131.1 lytic murein transglycosylase B -
  RIN58_RS15385 (RIN58_15385) - 3226179..3226901 (-) 723 WP_031523009.1 amino acid ABC transporter ATP-binding protein -
  RIN58_RS15390 (RIN58_15390) - 3226888..3227652 (-) 765 WP_313796132.1 amino acid ABC transporter permease -
  RIN58_RS15395 (RIN58_15395) - 3227719..3228486 (-) 768 WP_031523006.1 basic amino acid ABC transporter substrate-binding protein -
  RIN58_RS15400 (RIN58_15400) - 3228668..3228880 (+) 213 WP_031523004.1 KTSC domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38200.61 Da        Isoelectric Point: 4.8856

>NTDB_id=879971 RIN58_RS15370 WP_031523014.1 3223205..3224269(-) (recA) [Siccibacter colletis strain 3.2.4]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQA
IASAQRSGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYQGDKIGQGKANATNFLKENVAIATEI
EKKVREMLLNNQDGTPDFVVDDHDKDVEETKEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=879971 RIN58_RS15370 WP_031523014.1 3223205..3224269(-) (recA) [Siccibacter colletis strain 3.2.4]
ATGGCTATCGACGAAAACAAACAGAAGGCGTTAGCGGCAGCACTTGGCCAGATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGCTCCATGGATGTTGAGACTATCTCTACCGGTTCTCTCTCGCTCGACATCGCGCTTGGCG
CAGGTGGTCTGCCGATGGGCCGTATCGTTGAGATCTATGGTCCGGAGTCTTCGGGTAAAACCACGCTGACCCTGCAGGCT
ATCGCCTCTGCACAGCGCAGCGGTAAAACCTGTGCGTTCATTGACGCCGAGCACGCGCTGGACCCGGTCTACGCCCGCAA
GCTGGGTGTTGATATCGACAACCTGCTCTGCTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGTTCCGGTGCGGTAGACGTTATCGTCGTCGACTCCGTTGCTGCGCTGACCCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACCCTGCTTATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTTGGTAACCCGGAAACCACCACCGGGGGTA
ACGCGCTGAAGTTCTACGCTTCTGTCCGTCTTGATATCCGCCGTATCGGCGCGGTGAAAGAGGGCGACGAAGTGGTCGGT
AGCGAAACCCGCGTAAAAGTGGTGAAAAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATCGAGAAAGCGGGCGCATGGTACAGCT
ATCAGGGCGACAAGATTGGCCAGGGTAAAGCTAACGCCACTAACTTCCTGAAAGAGAACGTTGCTATCGCGACGGAGATC
GAGAAGAAAGTGCGTGAGATGCTGCTGAACAATCAGGATGGCACGCCGGACTTCGTGGTCGATGACCATGACAAAGACGT
CGAAGAAACGAAAGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.503

0.791
  recA Vibrio cholerae strain A1552

84.592

93.503

0.791
  recA Acinetobacter baumannii D1279779

73.043

97.458

0.712
  recA Pseudomonas stutzeri DSM 10701

73.887

95.198

0.703
  recA Acinetobacter baylyi ADP1

75.841

92.373

0.701
  recA Glaesserella parasuis strain SC1401

68.946

99.153

0.684
  recA Neisseria gonorrhoeae MS11

69.018

92.09

0.636
  recA Neisseria gonorrhoeae MS11

69.018

92.09

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.09

0.636
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Streptococcus pneumoniae Rx1

63.158

91.243

0.576
  recA Streptococcus pneumoniae TIGR4

63.158

91.243

0.576
  recA Streptococcus pneumoniae R6

63.158

91.243

0.576
  recA Streptococcus pneumoniae D39

63.158

91.243

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.678

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

92.373

0.571
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Streptococcus pyogenes NZ131

61.538

91.808

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.243

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.678

0.548