Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RJ609_RS09015 Genome accession   NZ_CP134269
Coordinates   2172130..2173155 (+) Length   341 a.a.
NCBI ID   WP_036111514.1    Uniprot ID   A0A108U6N7
Organism   Lysobacter capsici strain XL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167130..2178155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ609_RS08995 (RJ609_08995) - 2169306..2169803 (+) 498 WP_187313405.1 CinA family protein -
  RJ609_RS09000 (RJ609_09000) - 2170088..2171029 (-) 942 WP_310980983.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  RJ609_RS09005 (RJ609_09005) lexA 2171180..2171827 (+) 648 WP_036111519.1 transcriptional repressor LexA -
  RJ609_RS09010 (RJ609_09010) - 2171844..2172092 (+) 249 WP_148650311.1 hypothetical protein -
  RJ609_RS09015 (RJ609_09015) recA 2172130..2173155 (+) 1026 WP_036111514.1 recombinase RecA Machinery gene
  RJ609_RS09020 (RJ609_09020) recX 2173704..2174180 (+) 477 Protein_1774 recombination regulator RecX -
  RJ609_RS09025 (RJ609_09025) alaS 2174344..2176977 (+) 2634 WP_046656227.1 alanine--tRNA ligase -
  RJ609_RS09030 (RJ609_09030) csrA 2177122..2177325 (+) 204 WP_036111509.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36778.49 Da        Isoelectric Point: 5.2017

>NTDB_id=879515 RJ609_RS09015 WP_036111514.1 2172130..2173155(+) (recA) [Lysobacter capsici strain XL2]
MDENKKRALTAALSQIDKQFGKGSVMRMGDRAVEITEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCGDERIGQGKENARQYLKENPEMAARL
EATLREKFVPSDAPREEVIED

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=879515 RJ609_RS09015 WP_036111514.1 2172130..2173155(+) (recA) [Lysobacter capsici strain XL2]
ATGGACGAGAACAAGAAGCGCGCCCTTACCGCCGCTCTGAGCCAGATCGACAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGCGGTCGAGATCACCGAAGTCATCGGTACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATTTACGGTCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGAAGGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTATGCCGCCAAGCTCGG
CGTCAATGTCGACGACCTGCTGCTGTCGCAGCCCGACACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTCGACATCGTCGTGATCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCGGGCACCCT
GGTGGTGTTCATCAATCAGCTTCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTCGCCCCTCCGTTCAAGCAGGTCGTCACCGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCCGGCGCCTGGTACAGCT
GCGGCGACGAGCGCATCGGCCAGGGTAAGGAAAACGCCCGCCAGTACCTCAAGGAAAATCCCGAGATGGCGGCCCGCCTG
GAAGCGACGCTGCGCGAGAAGTTCGTGCCCAGCGACGCCCCGCGTGAAGAAGTCATCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108U6N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.171

97.654

0.695
  recA Ralstonia pseudosolanacearum GMI1000

74.76

91.789

0.686
  recA Acinetobacter baumannii D1279779

68.328

100

0.683
  recA Acinetobacter baylyi ADP1

70.517

96.481

0.68
  recA Vibrio cholerae strain A1552

70.859

95.601

0.677
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.859

95.601

0.677
  recA Neisseria gonorrhoeae MS11

68.098

95.601

0.651
  recA Neisseria gonorrhoeae MS11

68.098

95.601

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.098

95.601

0.651
  recA Glaesserella parasuis strain SC1401

68.111

94.721

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.562

92.962

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

97.654

0.616
  recA Helicobacter pylori strain NCTC11637

60.58

100

0.613
  recA Helicobacter pylori 26695

60.29

100

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.012

98.534

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

95.308

0.601
  recA Streptococcus pneumoniae Rx1

60.976

96.188

0.587
  recA Streptococcus pneumoniae D39

60.976

96.188

0.587
  recA Streptococcus pneumoniae R6

60.976

96.188

0.587
  recA Streptococcus pneumoniae TIGR4

60.976

96.188

0.587
  recA Streptococcus mitis SK321

60.366

96.188

0.581
  recA Streptococcus mitis NCTC 12261

60.061

96.188

0.578
  recA Streptococcus mutans UA159

59.394

96.774

0.575
  recA Streptococcus pyogenes NZ131

59.091

96.774

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60

95.308

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

92.375

0.554