Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHP47_RS05340 Genome accession   NZ_CP134200
Coordinates   1054620..1055678 (+) Length   352 a.a.
NCBI ID   WP_149818857.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QKsg1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049620..1060678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP47_RS05325 (RHP47_05325) - 1052094..1053251 (-) 1158 WP_310841243.1 DUF58 domain-containing protein -
  RHP47_RS05330 (RHP47_05330) - 1053266..1053739 (-) 474 WP_226972021.1 co-chaperone YbbN -
  RHP47_RS05335 (RHP47_05335) - 1053757..1054545 (+) 789 WP_149818855.1 hypothetical protein -
  RHP47_RS05340 (RHP47_05340) recA 1054620..1055678 (+) 1059 WP_149818857.1 recombinase RecA Machinery gene
  RHP47_RS05345 (RHP47_05345) - 1055645..1056184 (-) 540 WP_310841245.1 GNAT family N-acetyltransferase -
  RHP47_RS05350 (RHP47_05350) - 1056186..1057052 (-) 867 WP_149821693.1 tetratricopeptide repeat protein -
  RHP47_RS05355 (RHP47_05355) - 1057279..1057548 (+) 270 WP_149818861.1 CD225/dispanin family protein -
  RHP47_RS05360 (RHP47_05360) nagA 1057519..1058667 (-) 1149 WP_149818863.1 N-acetylglucosamine-6-phosphate deacetylase -
  RHP47_RS05365 (RHP47_05365) - 1058664..1058897 (-) 234 WP_149818865.1 ferredoxin family protein -
  RHP47_RS05370 (RHP47_05370) - 1058948..1060579 (-) 1632 WP_310841247.1 helicase HerA domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37687.95 Da        Isoelectric Point: 5.5079

>NTDB_id=879243 RHP47_RS05340 WP_149818857.1 1054620..1055678(+) (recA) [Thermosynechococcus sp. QKsg1]
MSDTTLASEKRKALELAVSQIERNFGKGSIMRLGDATRMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAAVQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGETGLEIVDQLVRSTAVDIVVVDSVAALVPRAELEG
EMGDSHVGLQARLMSQGLRKITGNIGKTGCTVIFLNQLRQKIGVTYGNPETTTGGTALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISNLGCILDMAEETGVISRKGAWYSYNGENLAQGRDNTIKYMEENPAFAQ
EVEQQVRQKLDQGVAVSANTVTHTHEEMADEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=879243 RHP47_RS05340 WP_149818857.1 1054620..1055678(+) (recA) [Thermosynechococcus sp. QKsg1]
ATGAGTGACACCACCCTTGCCTCCGAAAAACGCAAAGCCCTTGAGCTTGCCGTCTCCCAAATCGAACGCAACTTTGGTAA
GGGCAGCATCATGCGCCTTGGGGATGCCACCCGCATGAAGGTGGAAACCATCTCTAGCGGTGCCCTCACCCTTGACCTTG
CTTTGGGGGGTGGACTGCCGAAGGGGCGGATCATTGAAATTTATGGCCCTGAAAGTTCGGGGAAAACCACCTTGGCACTT
CATGCGGTGGCCGCAGTCCAGAAAGCCGGTGGTGTAGCTGCCTTTGTCGATGCTGAACATGCCCTTGATCCCACCTATGC
GGCTGCCCTCGGCGTGGACATTGAAAACCTACTGGTGGCTCAGCCAGACACTGGGGAAACGGGTCTAGAAATTGTTGATC
AACTGGTGCGCTCGACAGCCGTAGATATTGTGGTGGTGGACTCCGTTGCGGCCTTGGTGCCCCGCGCTGAACTGGAAGGG
GAAATGGGCGACAGCCATGTGGGGCTGCAAGCGCGCCTCATGAGCCAAGGCTTGCGCAAAATTACCGGTAATATTGGTAA
AACAGGCTGCACCGTGATTTTCCTGAACCAATTGCGGCAAAAAATTGGTGTCACCTACGGTAACCCAGAAACGACGACGG
GGGGAACCGCCCTCAAGTTCTATGCTTCAGTGCGCCTAGATATTCGGCGGGTGCAAACTCTGAAGAAGGGAACGGAGGAA
TTTGGGATTCGCGCCAAAGTCAAGGTGGCCAAAAACAAAGTGGCGCCACCCTTTCGCATTGCTGAGTTTGACATCATTTT
TGGTAAGGGCATTTCCAATCTCGGCTGCATTCTTGATATGGCCGAGGAAACCGGTGTGATTAGCCGCAAAGGAGCTTGGT
ATTCCTACAACGGCGAAAATCTTGCCCAAGGCCGCGACAACACAATTAAATATATGGAGGAGAACCCTGCCTTTGCCCAA
GAGGTCGAACAGCAGGTGCGGCAAAAGCTAGACCAAGGGGTAGCCGTCTCTGCCAATACGGTGACTCATACCCACGAGGA
AATGGCTGACGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

62.319

98.011

0.611
  recA Acinetobacter baylyi ADP1

61.808

97.443

0.602
  recA Streptococcus pneumoniae Rx1

58.31

100

0.588
  recA Streptococcus pneumoniae D39

58.31

100

0.588
  recA Streptococcus pneumoniae R6

58.31

100

0.588
  recA Streptococcus pneumoniae TIGR4

58.31

100

0.588
  recA Acinetobacter baumannii D1279779

63.975

91.477

0.585
  recA Ralstonia pseudosolanacearum GMI1000

62.691

92.898

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60.606

93.75

0.568
  recA Neisseria gonorrhoeae MS11

61.728

92.045

0.568
  recA Neisseria gonorrhoeae MS11

61.728

92.045

0.568
  recA Neisseria gonorrhoeae strain FA1090

61.728

92.045

0.568
  recA Streptococcus mitis NCTC 12261

60.671

93.182

0.565
  recA Streptococcus mitis SK321

60.671

93.182

0.565
  recA Glaesserella parasuis strain SC1401

60.991

91.761

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

60.87

91.477

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.683

94.886

0.557
  recA Streptococcus pyogenes NZ131

59.091

93.75

0.554
  recA Helicobacter pylori 26695

60.185

92.045

0.554
  recA Helicobacter pylori strain NCTC11637

60.185

92.045

0.554
  recA Streptococcus mutans UA159

59.451

93.182

0.554
  recA Lactococcus lactis subsp. cremoris KW2

59.077

92.33

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.627

91.477

0.545
  recA Vibrio cholerae strain A1552

59.627

91.477

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.232

93.182

0.543
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.41

92.898

0.543