Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHJ13_RS09390 Genome accession   NZ_CP134179
Coordinates   1912243..1913301 (+) Length   352 a.a.
NCBI ID   WP_206199939.1    Uniprot ID   -
Organism   Thermosynechococcus sp. TG218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1907243..1918301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHJ13_RS09375 (RHJ13_09375) - 1909717..1910874 (-) 1158 WP_310800160.1 DUF58 domain-containing protein -
  RHJ13_RS09380 (RHJ13_09380) - 1910889..1911347 (-) 459 WP_225901551.1 co-chaperone YbbN -
  RHJ13_RS09385 (RHJ13_09385) - 1911380..1912168 (+) 789 WP_206199938.1 hypothetical protein -
  RHJ13_RS09390 (RHJ13_09390) recA 1912243..1913301 (+) 1059 WP_206199939.1 recombinase RecA Machinery gene
  RHJ13_RS09395 (RHJ13_09395) - 1913268..1913807 (-) 540 WP_310800161.1 GNAT family N-acetyltransferase -
  RHJ13_RS09400 (RHJ13_09400) - 1913809..1914675 (-) 867 WP_302676020.1 tetratricopeptide repeat protein -
  RHJ13_RS09405 (RHJ13_09405) - 1914902..1915171 (+) 270 WP_149818861.1 CD225/dispanin family protein -
  RHJ13_RS09410 (RHJ13_09410) nagA 1915142..1916293 (-) 1152 WP_310800162.1 N-acetylglucosamine-6-phosphate deacetylase -
  RHJ13_RS09415 (RHJ13_09415) - 1916290..1916517 (-) 228 WP_011057929.1 ferredoxin family protein -
  RHJ13_RS09420 (RHJ13_09420) - 1916568..1918199 (-) 1632 WP_206199942.1 ATP-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37685.94 Da        Isoelectric Point: 5.5016

>NTDB_id=879151 RHJ13_RS09390 WP_206199939.1 1912243..1913301(+) (recA) [Thermosynechococcus sp. TG218]
MSDTTLSPEKRKALELAVSQIERNFGKGSIMRLGDATRMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAEVQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGEVGLEIVDQLVRSTAVDIVVVDSVAALVPRAELEG
EMGDSHVGLQARLMSQGLRKITGNIGKTGCTVIFLNQLRQKIGITYGNPETTTGGTALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISNLGCILDMAEETGVISRKGAWYSYNGENLAQGRDNTIKYMEENPSFAQ
EVEQQVRQKLDQGAVVSANTVTHTHDDMGDGE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=879151 RHJ13_RS09390 WP_206199939.1 1912243..1913301(+) (recA) [Thermosynechococcus sp. TG218]
ATGAGTGACACCACCCTTTCCCCCGAAAAGCGCAAAGCCCTTGAGCTTGCCGTCTCCCAAATCGAACGCAACTTTGGTAA
GGGCAGCATCATGCGCCTTGGGGATGCCACCCGCATGAAAGTGGAAACCATCTCTAGCGGGGCACTCACCCTTGACCTTG
CTTTGGGGGGTGGACTGCCGAAGGGGCGGATCATTGAAATTTATGGCCCTGAAAGTTCGGGGAAAACTACCTTGGCGCTC
CATGCCGTAGCTGAAGTCCAAAAAGCCGGTGGCGTGGCTGCCTTTGTGGATGCTGAACATGCTCTTGATCCCACCTATGC
GGCTGCCCTCGGCGTGGACATTGAAAACCTACTGGTTGCCCAGCCAGACACTGGCGAAGTGGGTCTAGAAATTGTTGATC
AACTGGTGCGCTCGACAGCCGTAGATATTGTGGTGGTGGACTCCGTTGCTGCCTTGGTGCCCCGCGCTGAACTAGAAGGG
GAAATGGGCGACAGCCATGTGGGGCTGCAAGCGCGCCTCATGAGCCAAGGCCTGCGCAAAATTACCGGCAATATTGGCAA
AACGGGCTGCACCGTGATTTTTTTGAACCAATTGCGGCAAAAAATTGGTATTACCTACGGTAACCCAGAAACGACAACGG
GGGGAACAGCACTTAAGTTCTACGCCTCAGTGCGTTTGGATATTCGGCGGGTGCAAACCCTGAAGAAGGGAACGGAGGAA
TTTGGGATTCGCGCCAAAGTTAAGGTGGCCAAAAACAAGGTGGCACCGCCCTTTCGCATTGCCGAGTTTGACATTATTTT
TGGTAAGGGTATTTCCAATCTTGGCTGCATTCTTGATATGGCCGAGGAAACCGGTGTGATTAGCCGCAAAGGGGCTTGGT
ATTCCTACAACGGCGAAAATTTGGCCCAAGGCCGCGACAACACGATTAAATACATGGAGGAGAACCCCAGCTTTGCCCAA
GAGGTCGAACAGCAGGTGCGGCAAAAGCTAGACCAAGGGGCAGTTGTCTCCGCCAATACGGTGACTCATACCCACGATGA
CATGGGTGACGGAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

61.032

99.148

0.605
  recA Ralstonia pseudosolanacearum GMI1000

61.877

96.875

0.599
  recA Acinetobacter baylyi ADP1

61.224

97.443

0.597
  recA Acinetobacter baumannii D1279779

62.883

92.614

0.582
  recA Streptococcus pneumoniae Rx1

58.79

98.58

0.58
  recA Streptococcus pneumoniae D39

58.79

98.58

0.58
  recA Streptococcus pneumoniae TIGR4

58.79

98.58

0.58
  recA Streptococcus pneumoniae R6

58.79

98.58

0.58
  recA Glaesserella parasuis strain SC1401

58.382

98.295

0.574
  recA Neisseria gonorrhoeae strain FA1090

61.728

92.045

0.568
  recA Neisseria gonorrhoeae MS11

61.728

92.045

0.568
  recA Neisseria gonorrhoeae MS11

61.728

92.045

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

60.121

94.034

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.875

90.909

0.563
  recA Streptococcus mitis NCTC 12261

60.923

92.33

0.562
  recA Streptococcus mitis SK321

60.923

92.33

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.104

95.17

0.562
  recA Streptococcus mutans UA159

60.308

92.33

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.484

98.58

0.557
  recA Helicobacter pylori 26695

59.633

92.898

0.554
  recA Helicobacter pylori strain NCTC11637

59.633

92.898

0.554
  recA Streptococcus pyogenes NZ131

59.327

92.898

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.642

92.045

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.282

92.614

0.54
  recA Vibrio cholerae strain A1552

58.282

92.614

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.716

95.17

0.54