Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHG98_RS09340 Genome accession   NZ_CP134166
Coordinates   1894834..1895892 (+) Length   352 a.a.
NCBI ID   WP_310742951.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PP22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889834..1900892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHG98_RS09325 (RHG98_09325) - 1892308..1893465 (-) 1158 WP_206199937.1 DUF58 domain-containing protein -
  RHG98_RS09330 (RHG98_09330) - 1893480..1893938 (-) 459 WP_225901551.1 co-chaperone YbbN -
  RHG98_RS09335 (RHG98_09335) - 1893971..1894759 (+) 789 WP_310742950.1 hypothetical protein -
  RHG98_RS09340 (RHG98_09340) recA 1894834..1895892 (+) 1059 WP_310742951.1 recombinase RecA Machinery gene
  RHG98_RS09345 (RHG98_09345) - 1895859..1896398 (-) 540 WP_310742952.1 GNAT family N-acetyltransferase -
  RHG98_RS09350 (RHG98_09350) - 1896400..1897266 (-) 867 WP_310742953.1 tetratricopeptide repeat protein -
  RHG98_RS09355 (RHG98_09355) - 1897493..1897762 (+) 270 WP_149818861.1 CD225/dispanin family protein -
  RHG98_RS09360 (RHG98_09360) nagA 1897733..1898884 (-) 1152 WP_206199941.1 N-acetylglucosamine-6-phosphate deacetylase -
  RHG98_RS09365 (RHG98_09365) - 1898881..1899108 (-) 228 WP_011057929.1 ferredoxin family protein -
  RHG98_RS09370 (RHG98_09370) - 1899159..1900790 (-) 1632 WP_206199942.1 ATP-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37671.91 Da        Isoelectric Point: 5.4983

>NTDB_id=878943 RHG98_RS09340 WP_310742951.1 1894834..1895892(+) (recA) [Thermosynechococcus sp. PP22]
MSDTTLSPEKRKALELAVSQIERNFGKGSIMRLGDATRMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAEVQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGEVGLEIVDQLVRSTAVDIVVVDSVAALVPRAEIEG
DMGDSHVGLQARLMSQALRKITGNIGKTGCTVIFLNQLRQKIGVTYGNPETTTGGTALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISNLGCILDMAEETGVISRKGAWYSYNGENLAQGRDNTIKYMEENPSFAQ
EVEQQVRQKLDQGAVVSANTVTHTHDDMGDGE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=878943 RHG98_RS09340 WP_310742951.1 1894834..1895892(+) (recA) [Thermosynechococcus sp. PP22]
ATGAGTGACACCACCCTTTCCCCCGAAAAGCGCAAAGCCCTTGAGCTTGCCGTCTCCCAAATCGAACGCAACTTTGGTAA
GGGCAGCATCATGCGCCTTGGGGATGCCACCCGCATGAAAGTGGAAACCATCTCTAGCGGGGCACTCACCCTTGACCTTG
CTTTGGGGGGTGGACTGCCGAAGGGGCGGATCATTGAAATTTATGGCCCTGAAAGTTCGGGGAAAACTACCTTGGCGCTC
CATGCCGTAGCTGAAGTCCAAAAAGCCGGTGGCGTGGCTGCCTTTGTCGATGCTGAACATGCTCTTGATCCCACCTATGC
GGCTGCCCTCGGCGTGGACATTGAAAACCTACTGGTTGCCCAGCCAGACACTGGCGAAGTGGGTCTAGAAATTGTTGATC
AACTGGTGCGCTCGACAGCCGTAGATATTGTGGTGGTGGACTCCGTTGCTGCCTTGGTGCCCCGCGCCGAAATTGAGGGG
GATATGGGGGATAGCCATGTGGGATTGCAAGCCCGCCTGATGAGCCAAGCCCTGCGCAAAATTACCGGTAATATTGGTAA
AACAGGCTGCACCGTGATTTTCCTGAACCAATTGCGGCAAAAAATTGGTGTCACCTACGGTAACCCAGAAACGACAACCG
GCGGAACCGCCCTCAAGTTCTATGCCTCGGTGCGCCTAGATATTCGGCGGGTGCAAACCCTGAAGAAGGGAACGGAGGAA
TTTGGGATTCGCGCCAAAGTTAAGGTGGCCAAAAACAAGGTGGCACCGCCCTTTCGCATTGCCGAGTTTGACATTATTTT
TGGTAAGGGTATTTCCAATCTTGGCTGCATTCTTGATATGGCCGAGGAAACCGGTGTGATTAGCCGCAAAGGGGCTTGGT
ATTCCTACAACGGCGAAAATTTGGCCCAAGGCCGCGACAACACGATTAAATACATGGAGGAGAACCCCAGCTTTGCCCAA
GAGGTCGAACAGCAGGTGCGGCAAAAGCTAGACCAAGGGGCAGTTGTCTCCGCCAATACGGTGACTCATACCCACGATGA
CATGGGTGACGGAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

61.605

99.148

0.611
  recA Ralstonia pseudosolanacearum GMI1000

62.463

96.875

0.605
  recA Acinetobacter baylyi ADP1

62.537

96.307

0.602
  recA Streptococcus pneumoniae D39

59.942

98.58

0.591
  recA Streptococcus pneumoniae Rx1

59.942

98.58

0.591
  recA Streptococcus pneumoniae TIGR4

59.942

98.58

0.591
  recA Streptococcus pneumoniae R6

59.942

98.58

0.591
  recA Acinetobacter baumannii D1279779

63.497

92.614

0.588
  recA Glaesserella parasuis strain SC1401

59.538

98.295

0.585
  recA Neisseria gonorrhoeae MS11

62.963

92.045

0.58
  recA Neisseria gonorrhoeae MS11

62.963

92.045

0.58
  recA Neisseria gonorrhoeae strain FA1090

62.963

92.045

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.329

94.034

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

95.17

0.574
  recA Streptococcus mitis SK321

62.154

92.33

0.574
  recA Streptococcus mitis NCTC 12261

62.154

92.33

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

90.909

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.349

98.58

0.565
  recA Streptococcus mutans UA159

60.923

92.33

0.562
  recA Helicobacter pylori 26695

60.55

92.898

0.562
  recA Streptococcus pyogenes NZ131

60.55

92.898

0.562
  recA Helicobacter pylori strain NCTC11637

60.55

92.898

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.91

95.17

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.896

92.614

0.545
  recA Vibrio cholerae strain A1552

58.896

92.614

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.259

92.045

0.545