Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RE429_RS08100 Genome accession   NZ_CP134063
Coordinates   1724864..1725958 (+) Length   364 a.a.
NCBI ID   WP_414473801.1    Uniprot ID   -
Organism   Microvirga sp. M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719864..1730958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE429_RS08085 (RE429_08060) dksA 1719882..1720301 (+) 420 WP_370436899.1 RNA polymerase-binding protein DksA -
  RE429_RS08090 (RE429_08065) - 1720478..1721755 (-) 1278 WP_414473799.1 hypothetical protein -
  RE429_RS08095 (RE429_08070) cckA 1722159..1724690 (+) 2532 WP_414473800.1 cell cycle histidine kinase CckA -
  RE429_RS08100 (RE429_08075) recA 1724864..1725958 (+) 1095 WP_414473801.1 recombinase RecA Machinery gene
  RE429_RS08105 (RE429_08080) - 1726055..1726993 (-) 939 WP_414473802.1 calcium-binding protein -
  RE429_RS08110 (RE429_08085) alaS 1727230..1729878 (+) 2649 WP_414473803.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39025.53 Da        Isoelectric Point: 5.0575

>NTDB_id=878561 RE429_RS08100 WP_414473801.1 1724864..1725958(+) (recA) [Microvirga sp. M2]
MSQSSLRLVESSSMDKDKSKALDAALSQIERAFGKGSIMRLGKGQQPVEIETISTGSLGLDIALGVGGLPRGRIIEIYGP
ESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTGEQALEIADTLVRSGAVDVLVIDSVA
ALTPKAELDGEMGEVQPGLQARLMSQALRKLTGSISRSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRR
ISTLKDRDDPIGNSVRVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELVDLGVKAGIVDKSGAWFSYDSQRLGQGRENAKQ
FLRDNPEVADKIEGLIRQNAGLLADRILEQATPTTEDLDEGSAD

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=878561 RE429_RS08100 WP_414473801.1 1724864..1725958(+) (recA) [Microvirga sp. M2]
ATGTCGCAGTCTTCTCTGAGACTGGTGGAAAGCTCATCAATGGATAAAGACAAGTCGAAAGCTCTCGACGCGGCGCTCTC
ACAGATCGAGCGCGCCTTCGGCAAGGGCTCGATCATGCGGCTCGGCAAGGGGCAGCAGCCGGTCGAAATCGAAACCATCT
CGACGGGGTCGCTCGGCCTCGACATCGCGCTCGGCGTGGGCGGGCTGCCCCGCGGCCGCATCATCGAGATCTACGGGCCG
GAATCCTCCGGTAAGACCACGCTGGCGCTGCACACCATCGCCGAGGCCCAGAAGAAGGGCGGCGTCTGCGCCTTCGTGGA
CGCGGAACACGCGCTCGATCCCGTCTATGCCCGCAAGCTCGGCGTCAACCTGGACGATCTCCTGATCTCCCAGCCCGACA
CCGGCGAGCAGGCCCTTGAAATCGCCGATACGCTGGTGCGCTCCGGCGCGGTGGACGTGCTCGTCATCGACTCGGTGGCG
GCGCTCACCCCGAAGGCCGAGCTCGACGGCGAAATGGGCGAGGTCCAGCCGGGCCTCCAGGCCCGCCTCATGAGCCAGGC
CCTGCGCAAGCTCACCGGTTCGATCTCGCGCTCGAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCG
TCATGTACGGAAGCCCGGAGACGACCACGGGCGGCAATGCCCTGAAGTTCTACGCCTCCGTGCGCCTCGACATCCGCCGC
ATCTCGACCCTGAAGGATCGTGACGATCCGATCGGCAACTCGGTGCGCGTGAAGGTGGTCAAGAACAAGGTCGCACCGCC
CTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCCAAGGTGGGCGAACTCGTCGATCTCGGCGTCAAGG
CCGGCATCGTCGATAAGTCCGGCGCCTGGTTCTCATACGACAGCCAGCGCCTCGGCCAGGGCCGCGAGAACGCCAAGCAG
TTCCTGCGCGACAACCCCGAGGTCGCCGATAAGATCGAGGGCCTCATCCGCCAGAATGCCGGCCTCCTTGCCGACCGCAT
CCTGGAACAGGCGACCCCGACCACCGAAGACCTGGACGAGGGATCCGCCGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.162

91.758

0.635
  recA Pseudomonas stutzeri DSM 10701

66.377

94.78

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.394

90.659

0.629
  recA Glaesserella parasuis strain SC1401

66.176

93.407

0.618
  recA Acinetobacter baylyi ADP1

64.841

95.33

0.618
  recA Neisseria gonorrhoeae MS11

67.781

90.385

0.613
  recA Neisseria gonorrhoeae strain FA1090

67.781

90.385

0.613
  recA Neisseria gonorrhoeae MS11

67.781

90.385

0.613
  recA Helicobacter pylori 26695

66.667

90.659

0.604
  recA Helicobacter pylori strain NCTC11637

66.667

90.659

0.604
  recA Acinetobacter baumannii D1279779

67.385

89.286

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.769

89.286

0.596
  recA Vibrio cholerae strain A1552

66.769

89.286

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.478

92.033

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

62.319

94.78

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

89.56

0.591
  recA Streptococcus pneumoniae D39

56.044

100

0.56
  recA Streptococcus pneumoniae Rx1

56.044

100

0.56
  recA Streptococcus pneumoniae R6

56.044

100

0.56
  recA Streptococcus pneumoniae TIGR4

56.044

100

0.56
  recA Streptococcus mitis NCTC 12261

58.166

95.879

0.558
  recA Streptococcus mitis SK321

58.166

95.879

0.558
  recA Streptococcus mutans UA159

56.941

96.978

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.76

91.484

0.547
  recA Lactococcus lactis subsp. cremoris KW2

59.459

91.484

0.544
  recA Streptococcus pyogenes NZ131

59.697

90.659

0.541