Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RE424_RS06595 Genome accession   NZ_CP134047
Coordinates   1333347..1334390 (+) Length   347 a.a.
NCBI ID   WP_310790881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328347..1339390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS06570 ymfI 1329145..1329849 (+) 705 WP_023913792.1 elongation factor P 5-aminopentanone reductase -
  RE424_RS06575 - 1329954..1330781 (+) 828 WP_023913794.1 YmfK family protein -
  RE424_RS06580 - 1330800..1331192 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  RE424_RS06585 pgsA 1331226..1331804 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RE424_RS06590 - 1332031..1333182 (+) 1152 WP_000020363.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RE424_RS06595 recA 1333347..1334390 (+) 1044 WP_310790881.1 recombinase RecA Machinery gene
  RE424_RS06600 rny 1334744..1336303 (+) 1560 WP_001050913.1 ribonuclease Y -
  RE424_RS06605 - 1336600..1336815 (-) 216 WP_000026308.1 hypothetical protein -
  RE424_RS06610 - 1336989..1337786 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37628.51 Da        Isoelectric Point: 4.8509

>NTDB_id=878324 RE424_RS06595 WP_310790881.1 1333347..1334390(+) (recA) [Staphylococcus aureus strain 21SAU_AGRO3]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVKLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=878324 RE424_RS06595 WP_310790881.1 1333347..1334390(+) (recA) [Staphylococcus aureus strain 21SAU_AGRO3]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCAGTAAAACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAATCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.133

95.389

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

69.912

97.695

0.683
  recA Streptococcus pneumoniae R6

64.655

100

0.648
  recA Streptococcus pneumoniae Rx1

64.655

100

0.648
  recA Streptococcus pneumoniae D39

64.655

100

0.648
  recA Streptococcus pneumoniae TIGR4

64.655

100

0.648
  recA Streptococcus pyogenes NZ131

68.085

94.813

0.646
  recA Streptococcus mitis SK321

64.265

100

0.643
  recA Streptococcus mutans UA159

63.714

100

0.643
  recA Acinetobacter baumannii D1279779

64.08

100

0.643
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Neisseria gonorrhoeae MS11

64.897

97.695

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.897

97.695

0.634
  recA Neisseria gonorrhoeae MS11

64.897

97.695

0.634
  recA Streptococcus mitis NCTC 12261

65.766

95.965

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.602

97.695

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.257

95.389

0.622
  recA Helicobacter pylori strain NCTC11637

63.343

98.271

0.622
  recA Helicobacter pylori 26695

63.343

98.271

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.948

0.614
  recA Vibrio cholerae strain A1552

65.337

93.948

0.614
  recA Ralstonia pseudosolanacearum GMI1000

65.287

90.49

0.591
  recA Pseudomonas stutzeri DSM 10701

60.714

96.83

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.389

0.579
  recA Glaesserella parasuis strain SC1401

60.372

93.084

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.815

91.931

0.559