Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHO14_RS11815 Genome accession   NZ_CP133967
Coordinates   2640713..2641753 (-) Length   346 a.a.
NCBI ID   WP_392552104.1    Uniprot ID   -
Organism   Orbus wheelerorum strain lpD04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2623722..2641753 2640713..2641753 within 0


Gene organization within MGE regions


Location: 2623722..2641753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO14_RS11705 (RHO14_11580) - 2623722..2624648 (-) 927 WP_392552086.1 phage tail protein -
  RHO14_RS11710 (RHO14_11585) - 2624884..2625837 (-) 954 WP_392552087.1 phage tail protein -
  RHO14_RS11715 (RHO14_11590) - 2625821..2626486 (-) 666 WP_392552088.1 DUF2612 domain-containing protein -
  RHO14_RS11720 (RHO14_11595) - 2626479..2627600 (-) 1122 WP_392552089.1 baseplate J/gp47 family protein -
  RHO14_RS11725 (RHO14_11600) - 2627581..2627946 (-) 366 WP_392552090.1 hypothetical protein -
  RHO14_RS11730 (RHO14_11605) - 2627946..2628620 (-) 675 WP_392552091.1 Gp138 family membrane-puncturing spike protein -
  RHO14_RS11735 (RHO14_11610) - 2628699..2629541 (-) 843 WP_392552092.1 phage protein -
  RHO14_RS11740 (RHO14_11615) - 2629501..2629842 (-) 342 WP_392552093.1 phage baseplate plug protein -
  RHO14_RS11745 (RHO14_11620) - 2629876..2630604 (-) 729 WP_392552094.1 phage baseplate protein -
  RHO14_RS11750 (RHO14_11625) - 2630607..2632430 (-) 1824 WP_392552095.1 hypothetical protein -
  RHO14_RS11755 (RHO14_11630) - 2632570..2632983 (-) 414 WP_392552096.1 putative phage tail assembly chaperone -
  RHO14_RS11760 (RHO14_11635) - 2632983..2633414 (-) 432 WP_392552097.1 phage protein -
  RHO14_RS11765 (RHO14_11640) - 2633423..2634943 (-) 1521 WP_392552098.1 DUF3383 family protein -
  RHO14_RS11770 (RHO14_11645) - 2634943..2635437 (-) 495 WP_392552099.1 LIC_12616 family protein -
  RHO14_RS11775 (RHO14_11650) - 2635812..2636327 (-) 516 WP_392552100.1 antiterminator Q family protein -
  RHO14_RS11800 (RHO14_11675) csrA 2637103..2637303 (-) 201 WP_392552101.1 carbon storage regulator CsrA -
  RHO14_RS11805 (RHO14_11680) alaS 2637332..2639965 (-) 2634 WP_392552102.1 alanine--tRNA ligase -
  RHO14_RS11810 (RHO14_11685) - 2640232..2640681 (-) 450 WP_392552103.1 regulatory protein RecX -
  RHO14_RS11815 (RHO14_11690) recA 2640713..2641753 (-) 1041 WP_392552104.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36974.36 Da        Isoelectric Point: 5.1363

>NTDB_id=878063 RHO14_RS11815 WP_392552104.1 2640713..2641753(-) (recA) [Orbus wheelerorum strain lpD04]
MNENKQRALTAALSQIEKQFGKGSIMRLGDTQTLDVDAISTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKEGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVVIVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEDVIGSD
TRVKVVKNKVAAPFRQAEFQILYGCGISKEGELIDLGVKHKLVDKAGAWYSYNGDKIGQGKANSIKYLQEHTEISKELEA
KLRELLLSNPAVFNADEAASAADDGL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=878063 RHO14_RS11815 WP_392552104.1 2640713..2641753(-) (recA) [Orbus wheelerorum strain lpD04]
ATGAATGAGAATAAACAACGCGCATTGACAGCAGCTTTAAGTCAGATCGAAAAACAATTTGGTAAAGGTTCTATCATGCG
TTTGGGCGATACCCAAACCTTAGATGTTGATGCGATTTCTACTGGTTCATTAGGACTTGATATCGCACTTGGTATTGGTG
GTTTACCAATGGGCCGTATTGTTGAAATATTTGGGCCTGAATCATCGGGTAAAACAACATTAACACTATCGGTTATTGCT
CAAGCACAAAAAGAAGGTAAAACCTGTGCATTTATTGATGCAGAGCACGCATTAGATCCAATTTATGCGGCTAAATTAGG
TGTCCAAGTTGATGATTTATTAGTATCACAGCCAGACACGGGTGAACAAGCACTTGAAATTTGTGATGCTTTAGTCCGCT
CAGGCGCGGTTGACGTCGTTATTGTTGACTCGGTTGCTGCATTAACACCAAGAGCAGAAATCGAAGGTGAAATGGGTGAT
TCTCATATGGGATTACAAGCCCGTCTGATGTCTCAAGCATTACGTAAATTGACCGCAAATATTAAAAATGCGAACTGTTT
AGTGGTGTTTATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAATCCTGAAACGACTACTGGTGGTAATGCGC
TTAAATTTTACGCTTCCGTTCGCCTTGATATTCGCCGCATCGGCGCCGTAAAAGAAGGCGAAGATGTGATCGGTAGTGAT
ACGCGCGTTAAAGTAGTGAAAAATAAAGTCGCAGCACCATTTAGGCAAGCTGAATTCCAAATTTTATATGGTTGTGGGAT
TTCTAAAGAAGGTGAACTTATTGATCTAGGCGTCAAACATAAGTTAGTCGATAAAGCTGGTGCTTGGTATAGTTATAATG
GTGATAAAATTGGCCAAGGTAAAGCGAATTCTATCAAGTATTTACAAGAGCATACCGAAATTTCTAAAGAGCTAGAAGCT
AAATTGAGAGAGCTGTTACTGAGTAATCCGGCTGTTTTTAATGCTGATGAAGCTGCTTCTGCTGCTGATGATGGACTCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

77.907

99.422

0.775
  recA Vibrio cholerae O1 biovar El Tor strain E7946

77.907

99.422

0.775
  recA Pseudomonas stutzeri DSM 10701

76.991

97.977

0.754
  recA Glaesserella parasuis strain SC1401

74.487

98.555

0.734
  recA Acinetobacter baumannii D1279779

72.353

98.266

0.711
  recA Acinetobacter baylyi ADP1

75

94.798

0.711
  recA Neisseria gonorrhoeae MS11

72.393

94.22

0.682
  recA Neisseria gonorrhoeae MS11

72.393

94.22

0.682
  recA Neisseria gonorrhoeae strain FA1090

72.393

94.22

0.682
  recA Ralstonia pseudosolanacearum GMI1000

71.605

93.642

0.671
  recA Helicobacter pylori strain NCTC11637

62.874

96.532

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

92.197

0.604
  recA Helicobacter pylori 26695

62.275

96.532

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.665

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus mitis SK321

58.14

99.422

0.578
  recA Streptococcus pneumoniae D39

61.61

93.353

0.575
  recA Streptococcus pneumoniae TIGR4

61.61

93.353

0.575
  recA Streptococcus pneumoniae R6

61.61

93.353

0.575
  recA Streptococcus pneumoniae Rx1

61.61

93.353

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

92.775

0.572
  recA Streptococcus mitis NCTC 12261

60.991

93.353

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

92.775

0.569
  recA Streptococcus mutans UA159

60

93.931

0.564
  recA Streptococcus pyogenes NZ131

59.327

94.509

0.561
  recA Lactococcus lactis subsp. cremoris KW2

57.276

93.353

0.535