Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHO15_RS04910 Genome accession   NZ_CP133959
Coordinates   1082174..1083217 (+) Length   347 a.a.
NCBI ID   WP_392566909.1    Uniprot ID   -
Organism   Utexia brackfieldae strain lpD01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077174..1088217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO15_RS04890 (RHO15_04865) fruK 1078282..1079220 (+) 939 WP_392566906.1 1-phosphofructokinase -
  RHO15_RS04895 (RHO15_04870) fruA 1079235..1080920 (+) 1686 WP_392566907.1 PTS fructose transporter subunit IIBC -
  RHO15_RS04900 (RHO15_04875) - 1080994..1081569 (-) 576 WP_392566908.1 TIGR00730 family Rossman fold protein -
  RHO15_RS04910 (RHO15_04885) recA 1082174..1083217 (+) 1044 WP_392566909.1 recombinase RecA Machinery gene
  RHO15_RS04915 (RHO15_04890) - 1083253..1083759 (+) 507 WP_392566910.1 regulatory protein RecX -
  RHO15_RS04920 (RHO15_04895) alaS 1084056..1086686 (+) 2631 WP_392566911.1 alanine--tRNA ligase -
  RHO15_RS04925 (RHO15_04900) csrA 1086707..1086934 (+) 228 WP_392566912.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37318.64 Da        Isoelectric Point: 5.0197

>NTDB_id=878022 RHO15_RS04910 WP_392566909.1 1082174..1083217(+) (recA) [Utexia brackfieldae strain lpD01]
MNENKQRALSAALSQIEKQFGKGSIMRLGDTQTLDVDYISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKQGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVVIVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGEEVIGSD
TRVKVVKNKVAAPFRQAEFQILYGSGISKEGELIDLGVKHKLVDKAGAWYSYNGEKIGQGKANSMKYLQEHTGIANELEQ
KLRELLLSSPAEFIADDSAVNESEDAF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=878022 RHO15_RS04910 WP_392566909.1 1082174..1083217(+) (recA) [Utexia brackfieldae strain lpD01]
ATGAATGAGAATAAACAACGCGCACTGTCAGCTGCTTTAAGCCAGATTGAGAAACAATTTGGTAAAGGTTCCATTATGCG
TTTAGGTGATACACAAACGCTAGATGTCGATTATATTTCAACAGGTTCTTTAGGACTTGATGTCGCACTGGGCATTGGTG
GTTTACCGATGGGGCGAATCGTGGAGATTTTTGGACCAGAGTCTTCAGGTAAAACAACGCTAACGTTGTCGGTTATCGCC
CAAGCACAAAAACAAGGTAAAACCTGTGCATTTATTGATGCAGAACATGCGCTTGATCCCATCTATGCAGCTAAACTGGG
TGTGCAAGTCGATGATTTATTAGTTTCTCAGCCGGATACGGGTGAACAAGCTTTAGAAATTTGTGATGCTTTAGTCCGTT
CAGGTGCTGTTGATGTCGTGATTGTTGACTCTGTTGCCGCCTTAACCCCAAGAGCTGAAATTGAAGGTGAAATGGGGGAT
TCTCATATGGGCCTACAAGCGCGTTTGATGTCTCAAGCACTGCGTAAATTAACGGCTAATATCAAAAACGCTAACTGTTT
AGTGATCTTTATCAATCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAATCCAGAAACGACAACCGGTGGTAATGCGT
TGAAATTCTATGCCTCAGTTCGTTTAGATATACGTCGAATTGGTTCAGTCAAAGAGGGCGAAGAGGTGATTGGTAGTGAT
ACTCGCGTTAAAGTTGTTAAAAATAAAGTGGCTGCACCATTCCGTCAAGCTGAGTTCCAGATTCTATACGGCAGCGGTAT
TTCTAAAGAGGGTGAGTTAATTGATTTAGGTGTTAAACATAAATTAGTTGATAAAGCCGGTGCATGGTATAGCTATAACG
GCGAAAAAATTGGTCAGGGTAAGGCAAACTCGATGAAATATCTTCAAGAGCATACAGGGATTGCTAATGAGCTTGAACAG
AAATTACGCGAGCTATTACTCAGCAGCCCAGCAGAATTTATTGCTGATGACAGTGCTGTTAATGAAAGCGAAGACGCGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

77.059

97.983

0.755
  recA Vibrio cholerae O1 biovar El Tor strain E7946

77.059

97.983

0.755
  recA Pseudomonas stutzeri DSM 10701

78.248

95.389

0.746
  recA Glaesserella parasuis strain SC1401

76.22

94.524

0.72
  recA Acinetobacter baylyi ADP1

71.304

99.424

0.709
  recA Acinetobacter baumannii D1279779

73.252

94.813

0.695
  recA Neisseria gonorrhoeae MS11

71.779

93.948

0.674
  recA Neisseria gonorrhoeae MS11

71.779

93.948

0.674
  recA Neisseria gonorrhoeae strain FA1090

71.779

93.948

0.674
  recA Ralstonia pseudosolanacearum GMI1000

73.968

90.778

0.671
  recA Helicobacter pylori 26695

62.029

99.424

0.617
  recA Helicobacter pylori strain NCTC11637

61.739

99.424

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.123

93.372

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

92.507

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

95.389

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.976

94.524

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

92.507

0.571
  recA Streptococcus pneumoniae TIGR4

61.3

93.084

0.571
  recA Streptococcus pneumoniae Rx1

61.3

93.084

0.571
  recA Streptococcus pneumoniae D39

61.3

93.084

0.571
  recA Streptococcus pneumoniae R6

61.3

93.084

0.571
  recA Streptococcus mitis NCTC 12261

60.372

93.084

0.562
  recA Streptococcus mutans UA159

60

93.66

0.562
  recA Streptococcus mitis SK321

60.062

93.084

0.559
  recA Streptococcus pyogenes NZ131

59.692

93.66

0.559
  recA Lactococcus lactis subsp. cremoris KW2

55.882

97.983

0.548