Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHO11_RS06785 Genome accession   NZ_CP133958
Coordinates   1441375..1442415 (-) Length   346 a.a.
NCBI ID   WP_392560648.1    Uniprot ID   -
Organism   Orbus mooreae strain BiB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1436375..1447415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO11_RS06770 (RHO11_06750) csrA 1437871..1438077 (-) 207 WP_392560645.1 carbon storage regulator CsrA -
  RHO11_RS06775 (RHO11_06755) alaS 1438108..1440741 (-) 2634 WP_392560646.1 alanine--tRNA ligase -
  RHO11_RS06780 (RHO11_06760) - 1440894..1441385 (-) 492 WP_392560647.1 regulatory protein RecX -
  RHO11_RS06785 (RHO11_06765) recA 1441375..1442415 (-) 1041 WP_392560648.1 recombinase RecA Machinery gene
  RHO11_RS06795 (RHO11_06775) - 1443000..1443629 (-) 630 WP_392560649.1 MBL fold metallo-hydrolase -
  RHO11_RS06800 (RHO11_06780) mdtD 1443642..1445066 (-) 1425 WP_392560650.1 multidrug transporter subunit MdtD -
  RHO11_RS06805 (RHO11_06785) - 1445226..1446179 (-) 954 WP_392560651.1 bile acid:sodium symporter family protein -
  RHO11_RS06810 (RHO11_06790) - 1446318..1447091 (-) 774 WP_392560652.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37026.35 Da        Isoelectric Point: 4.8522

>NTDB_id=878007 RHO11_RS06785 WP_392560648.1 1441375..1442415(-) (recA) [Orbus mooreae strain BiB]
MNENKQRALTAALGQIEKQFGKGSIMRLGDTQTLDVDAISTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKEGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVVIVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEDVIGSD
TRVKVVKNKVAAPFRQAEFQILYGCGISKEGELIDLGVKHKLVDKAGAWYSYNGEKIGQGKANSIKFLQENPQKSQELEE
KLRELLLSNPGSLAAAEEDSPIGDDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=878007 RHO11_RS06785 WP_392560648.1 1441375..1442415(-) (recA) [Orbus mooreae strain BiB]
ATGAATGAGAATAAACAACGAGCTTTAACTGCAGCTTTAGGTCAAATTGAAAAACAATTTGGTAAAGGATCTATCATGCG
ATTAGGGGATACTCAAACCCTTGACGTGGATGCTATCTCTACAGGTTCGTTGGGACTTGATATCGCTTTAGGTATTGGTG
GTTTACCAATGGGGCGAATTGTTGAAATTTTTGGACCAGAATCATCAGGAAAAACTACGTTAACATTATCCGTTATTGCC
CAAGCGCAAAAAGAGGGTAAAACGTGTGCTTTTATTGATGCTGAACATGCTCTTGATCCAATTTATGCTGCTAAATTAGG
TGTACAAGTTGACGATTTGCTTGTTTCTCAGCCAGATACTGGTGAGCAAGCACTTGAGATTTGTGATGCATTAGTTCGTT
CAGGTGCGGTTGATGTGGTCATCGTTGACTCCGTCGCAGCTTTAACGCCTCGTGCTGAAATTGAAGGTGAAATGGGTGAT
TCCCATATGGGGCTACAAGCACGTTTGATGTCACAAGCATTAAGAAAATTGACGGCTAATATTAAAAATGCGAATTGTCT
TGTCGTATTTATTAACCAGATTCGAATGAAAATCGGCGTTATGTTTGGTAATCCAGAAACAACGACTGGTGGTAATGCGC
TTAAGTTTTATGCTTCAGTTCGTTTAGATATTCGTCGTATTGGTGCAGTGAAAGAAGGTGAAGATGTCATTGGTAGTGAC
ACTCGCGTAAAAGTTGTAAAAAATAAAGTTGCAGCACCATTTAGACAAGCTGAGTTTCAAATACTATATGGTTGTGGTAT
ATCTAAAGAAGGTGAGTTGATTGATTTAGGTGTTAAACATAAATTAGTTGATAAAGCCGGTGCTTGGTATAGTTATAATG
GTGAAAAAATTGGGCAAGGTAAAGCTAACTCAATTAAATTCTTACAAGAAAATCCACAAAAATCTCAAGAACTGGAAGAG
AAATTGAGAGAACTATTATTAAGTAATCCTGGTAGTCTAGCTGCGGCTGAAGAAGATTCACCTATTGGCGATGATGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

77.101

99.711

0.769
  recA Vibrio cholerae O1 biovar El Tor strain E7946

77.101

99.711

0.769
  recA Pseudomonas stutzeri DSM 10701

75.942

99.711

0.757
  recA Glaesserella parasuis strain SC1401

75.221

97.977

0.737
  recA Acinetobacter baylyi ADP1

72.647

98.266

0.714
  recA Acinetobacter baumannii D1279779

70.845

99.133

0.702
  recA Neisseria gonorrhoeae MS11

72.086

94.22

0.679
  recA Neisseria gonorrhoeae MS11

72.086

94.22

0.679
  recA Neisseria gonorrhoeae strain FA1090

72.086

94.22

0.679
  recA Ralstonia pseudosolanacearum GMI1000

72.222

93.642

0.676
  recA Helicobacter pylori strain NCTC11637

61.85

100

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

98.266

0.616
  recA Helicobacter pylori 26695

61.272

100

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

92.775

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.665

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

58.721

99.422

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

92.775

0.572
  recA Streptococcus pneumoniae D39

60.991

93.353

0.569
  recA Streptococcus pneumoniae Rx1

60.991

93.353

0.569
  recA Streptococcus pneumoniae R6

60.991

93.353

0.569
  recA Streptococcus pneumoniae TIGR4

60.991

93.353

0.569
  recA Streptococcus mutans UA159

60.615

93.931

0.569
  recA Streptococcus mitis SK321

60.681

93.353

0.566
  recA Streptococcus mitis NCTC 12261

60.681

93.353

0.566
  recA Streptococcus pyogenes NZ131

59.633

94.509

0.564
  recA Lactococcus lactis subsp. cremoris KW2

56.966

93.353

0.532