Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RIM64_RS10050 Genome accession   NZ_CP133951
Coordinates   2096107..2097243 (-) Length   378 a.a.
NCBI ID   WP_012516441.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2091107..2102243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS10025 (RIM64_10025) - 2092116..2093675 (-) 1560 WP_165619191.1 DUF2079 domain-containing protein -
  RIM64_RS10030 (RIM64_10030) - 2094227..2094526 (-) 300 WP_012516437.1 DUF1292 domain-containing protein -
  RIM64_RS10035 (RIM64_10035) ruvX 2094536..2094955 (-) 420 WP_012678687.1 Holliday junction resolvase RuvX -
  RIM64_RS10040 (RIM64_10040) - 2094952..2095221 (-) 270 WP_012516439.1 IreB family regulatory phosphoprotein -
  RIM64_RS10045 (RIM64_10045) spx 2095334..2095732 (-) 399 WP_012516440.1 transcriptional regulator Spx -
  RIM64_RS10050 (RIM64_10050) recA 2096107..2097243 (-) 1137 WP_012516441.1 recombinase RecA Machinery gene
  RIM64_RS10055 (RIM64_10055) cinA 2097328..2098608 (-) 1281 WP_165619190.1 competence/damage-inducible protein A Machinery gene
  RIM64_RS10060 (RIM64_10060) - 2099295..2099585 (-) 291 WP_012516443.1 hypothetical protein -
  RIM64_RS10065 (RIM64_10065) - 2099579..2100151 (-) 573 WP_012516444.1 phosphlipase A2 SlaA -
  RIM64_RS10070 (RIM64_10070) - 2100448..2101293 (+) 846 WP_012678692.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40558.21 Da        Isoelectric Point: 4.9679

>NTDB_id=877732 RIM64_RS10050 WP_012516441.1 2096107..2097243(-) (recA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MAKKVKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDHKVRVKFGLLEDTEESAAVDPAAAKADELVLELDDAIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=877732 RIM64_RS10050 WP_012516441.1 2096107..2097243(-) (recA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
TTGGCAAAAAAAGTTAAAAAAAATGAAGAAATCACCAAAAAATTTGGTGATGAACGTCGTAAGGCACTTGATGATGCGTT
AAAGAACATTGAAAAGGATTTTGGTAAGGGTGCGGTTATGCGCCTTGGTGAGCGTGCAGAGCAAAAGGTTCAGGTGATGA
GCTCAGGCAGTCTTGCTTTAGACATTGCGCTTGGAGCAGGTGGCTATCCCAAAGGGCGTATTATTGAAATCTATGGACCA
GAGTCTTCTGGTAAAACAACAGTTGCCCTGCATGCAGTAGCGCAGGCTCAAAAAGAAGGTGGTATTGCAGCCTTCATTGA
TGCGGAGCATGCCTTGGATCCTGCCTATGCTGCGGCGCTAGGTGTTAATATTGATGAGCTGCTTTTGTCACAGCCGGATT
CTGGTGAGCAAGGACTTGAGATAGCAGGTAAATTGATTGATTCTGGTGCTGTTGATTTGGTTGTTGTCGACTCTGTTGCA
GCTTTAGTGCCTCGTGCTGAGATTGATGGTGATATTGGTGATAACCACGTTGGTCTGCAGGCTCGTATGATGAGTCAGGC
AATGCGTAAGCTTTCAGCCTCAATCAATAAAACCAAGACAATTGCGATCTTTATTAACCAGCTGCGTGAAAAGGTAGGGG
TTATGTTTGGTAATCCAGAGACGACACCAGGTGGGCGTGCTTTGAAATTCTATGCCTCTGTCCGTCTGGATGTTCGTGGA
ACAACACAAATAAAAGGAACTGGAGATCAAAAAGACAGTAGTATTGGTAAGGAAACCAAGATTAAGGTTGTTAAGAATAA
GGTTGCTCCGCCATTTAAGGTGGCTGAGGTTGAAATCATGTATGGAGAAGGCATTTCACGTACAGGTGAGCTGATCAAAA
TTGCTTCAGATTTAGACATTATTCAAAAGGCTGGTGCTTGGTTCTCCTACAACGGTGAAAAAATTGGTCAGGGCTCTGAA
AATGCTAAGAGATATTTGGCTGACCACCCAGAGCTATTTGATGAGATTGATCATAAGGTGCGTGTTAAATTTGGCTTGCT
TGAAGATACCGAGGAAAGTGCAGCTGTAGATCCAGCTGCAGCCAAAGCAGATGAGCTGGTTTTAGAGCTAGACGATGCCA
TTGAAATTGAGGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

94.18

100

0.942
  recA Streptococcus mutans UA159

88.773

100

0.899
  recA Streptococcus mitis NCTC 12261

85.827

100

0.865
  recA Streptococcus pneumoniae Rx1

84.675

100

0.862
  recA Streptococcus pneumoniae D39

84.675

100

0.862
  recA Streptococcus pneumoniae R6

84.675

100

0.862
  recA Streptococcus pneumoniae TIGR4

84.675

100

0.862
  recA Streptococcus mitis SK321

85.302

100

0.86
  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

70.536

88.889

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

87.831

0.55
  recA Acinetobacter baylyi ADP1

58.857

92.593

0.545
  recA Neisseria gonorrhoeae strain FA1090

61.934

87.566

0.542
  recA Neisseria gonorrhoeae MS11

61.934

87.566

0.542
  recA Neisseria gonorrhoeae MS11

61.934

87.566

0.542
  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.45

0.532
  recA Acinetobacter baumannii D1279779

61.231

85.979

0.526
  recA Vibrio cholerae strain A1552

61.231

85.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.979

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.517

87.566

0.521
  recA Pseudomonas stutzeri DSM 10701

56.609

92.063

0.521
  recA Helicobacter pylori strain NCTC11637

58.485

87.302

0.511
  recA Helicobacter pylori 26695

58.485

87.302

0.511
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.862

0.5