Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHM55_RS06720 Genome accession   NZ_CP133784
Coordinates   1446415..1447506 (-) Length   363 a.a.
NCBI ID   WP_322180441.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441415..1452506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS06695 (RHM55_06695) - 1442211..1443107 (+) 897 WP_322180431.1 DMT family transporter -
  RHM55_RS06700 (RHM55_06700) - 1443102..1443812 (-) 711 WP_322180433.1 tRNA-uridine aminocarboxypropyltransferase -
  RHM55_RS06705 (RHM55_06705) - 1444067..1444477 (+) 411 WP_322180435.1 quorum-sensing-regulated virulence factor family protein -
  RHM55_RS06710 (RHM55_06710) - 1444778..1445896 (+) 1119 WP_322180437.1 LOG family protein -
  RHM55_RS06715 (RHM55_06715) recX 1445939..1446406 (-) 468 WP_322180439.1 recombination regulator RecX -
  RHM55_RS06720 (RHM55_06720) recA 1446415..1447506 (-) 1092 WP_322180441.1 recombinase RecA Machinery gene
  RHM55_RS06725 (RHM55_06725) - 1447592..1448092 (-) 501 WP_322180443.1 CinA family protein -
  RHM55_RS06730 (RHM55_06730) mutS 1448594..1451161 (+) 2568 WP_322182773.1 DNA mismatch repair protein MutS -
  RHM55_RS06735 (RHM55_06735) fdxA 1451399..1451722 (+) 324 WP_322180445.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38573.40 Da        Isoelectric Point: 6.5104

>NTDB_id=876768 RHM55_RS06720 WP_322180441.1 1446415..1447506(-) (recA) [Pseudomonas sp. MH9.2]
MDENKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLSVIA
QAQKLGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLAVLHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEIGANLEK
LIREKLLTPTADTKASPAADTKALPVKGAKMAAADLAETDVDI

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=876768 RHM55_RS06720 WP_322180441.1 1446415..1447506(-) (recA) [Pseudomonas sp. MH9.2]
ATGGACGAGAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAATTCGGCAAAGGTGCCGTTATGCG
CATGGGGGATCATGACCGCCAGGCGATTCCTTCTATTTCTACCGGCTCACTCGGGTTGGATATCGCCCTCGGTATCGGTG
GCTTGCCACGAGGCCGAATCGTTGAAATCTACGGTCCGGAGTCCTCGGGTAAAACCACGCTGACGCTTTCGGTTATCGCT
CAAGCCCAAAAGCTGGGTGCTACCTGTGCATTCGTCGATGCTGAGCACGCGCTCGATCCAGAATACGCAGGCAAGCTTGG
CGTCAATGTTGACGACCTGCTGGTGTCGCAACCCGATACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTTATTGTGATCGACTCCGTAGCAGCCCTGGTTCCGAAAGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTAGGCCTTCAGGCCCGTCTGATGTCACAGGCGTTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAGCCCGGAAACCACCACAGGCGGTAATGCGC
TCAAGTTCTATGCTTCGGTCCGTCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTTGTAGGCAGCGAA
ACCCGCGTCAAAGTCGTCAAGAACAAAGTGGCTCCGCCGTTTCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
TTACCTGAACGGCGAGATCATTGATCTGGCTGTACTTCACGGTTTTGTAGAGAAATCCGGTGCCTGGTACAGCTATCAGG
GCAGCAAGATTGGTCAGGGCAAAGCCAACTCGGCCAAGTTCCTGGCGGATAATCCGGAAATTGGTGCGAACCTCGAGAAG
CTGATTCGTGAAAAGCTGCTGACTCCGACTGCCGATACCAAGGCATCGCCTGCCGCCGACACCAAGGCATTACCTGTTAA
AGGTGCCAAAATGGCTGCTGCTGATCTGGCCGAAACCGACGTCGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.706

93.664

0.84
  recA Acinetobacter baylyi ADP1

75

92.562

0.694
  recA Acinetobacter baumannii D1279779

75.61

90.358

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

90.634

0.68
  recA Vibrio cholerae strain A1552

75.076

90.634

0.68
  recA Glaesserella parasuis strain SC1401

71.091

93.388

0.664
  recA Ralstonia pseudosolanacearum GMI1000

74.286

86.777

0.645
  recA Neisseria gonorrhoeae MS11

71.605

89.256

0.639
  recA Neisseria gonorrhoeae MS11

71.605

89.256

0.639
  recA Neisseria gonorrhoeae strain FA1090

71.605

89.256

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

90.083

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

92.011

0.579
  recA Helicobacter pylori strain NCTC11637

61.774

90.083

0.556
  recA Helicobacter pylori 26695

61.774

90.083

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

88.43

0.548
  recA Streptococcus mutans UA159

60

89.532

0.537
  recA Streptococcus pneumoniae Rx1

58.896

89.807

0.529
  recA Streptococcus pneumoniae D39

58.896

89.807

0.529
  recA Streptococcus pneumoniae R6

58.896

89.807

0.529
  recA Streptococcus pneumoniae TIGR4

58.896

89.807

0.529
  recA Streptococcus mitis SK321

59.133

88.981

0.526
  recA Streptococcus mitis NCTC 12261

59.133

88.981

0.526
  recA Streptococcus pyogenes NZ131

57.927

90.358

0.523
  recA Latilactobacillus sakei subsp. sakei 23K

60.577

85.95

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

89.807

0.51
  recA Lactococcus lactis subsp. cremoris KW2

56.966

88.981

0.507