Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | RHM68_RS05690 | Genome accession | NZ_CP133782 |
| Coordinates | 1284927..1285979 (+) | Length | 350 a.a. |
| NCBI ID | WP_322220941.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. DC1.2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1258828..1286455 | 1284927..1285979 | within | 0 |
Gene organization within MGE regions
Location: 1258828..1286455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RHM68_RS05545 (RHM68_05545) | - | 1258828..1259685 (+) | 858 | WP_322220914.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| RHM68_RS05550 (RHM68_05550) | rpoS | 1259793..1260800 (+) | 1008 | WP_322220915.1 | RNA polymerase sigma factor RpoS | - |
| RHM68_RS05555 (RHM68_05555) | - | 1260894..1261442 (+) | 549 | WP_322220916.1 | helix-turn-helix domain-containing protein | - |
| RHM68_RS05560 (RHM68_05560) | - | 1261469..1261759 (+) | 291 | WP_322220917.1 | IS3 family transposase | - |
| RHM68_RS26635 | - | 1261740..1262054 (+) | 315 | WP_369124954.1 | DDE-type integrase/transposase/recombinase | - |
| RHM68_RS05565 (RHM68_05565) | - | 1262225..1262959 (+) | 735 | WP_322220918.1 | hypothetical protein | - |
| RHM68_RS05570 (RHM68_05570) | - | 1263037..1264187 (+) | 1151 | WP_322220919.1 | IS3 family transposase | - |
| RHM68_RS05575 (RHM68_05575) | fdxA | 1264642..1264965 (-) | 324 | WP_322220920.1 | ferredoxin FdxA | - |
| RHM68_RS05580 (RHM68_05580) | mutS | 1265108..1267675 (-) | 2568 | WP_322223698.1 | DNA mismatch repair protein MutS | - |
| RHM68_RS05585 (RHM68_05585) | - | 1267888..1268622 (+) | 735 | WP_322220921.1 | XRE family transcriptional regulator | - |
| RHM68_RS05590 (RHM68_05590) | - | 1269162..1269503 (+) | 342 | WP_322220922.1 | phage holin family protein | - |
| RHM68_RS05595 (RHM68_05595) | - | 1269550..1270062 (+) | 513 | WP_322220923.1 | hypothetical protein | - |
| RHM68_RS05600 (RHM68_05600) | - | 1270066..1270677 (+) | 612 | WP_322220924.1 | phage baseplate assembly protein V | - |
| RHM68_RS05605 (RHM68_05605) | - | 1270689..1271021 (+) | 333 | WP_322220925.1 | phage baseplate protein | - |
| RHM68_RS05610 (RHM68_05610) | - | 1271018..1272013 (+) | 996 | WP_322220926.1 | baseplate J/gp47 family protein | - |
| RHM68_RS05615 (RHM68_05615) | - | 1272010..1272645 (+) | 636 | WP_322220927.1 | phage tail protein I | - |
| RHM68_RS05620 (RHM68_05620) | - | 1272646..1275135 (+) | 2490 | WP_322220928.1 | phage tail protein | - |
| RHM68_RS05625 (RHM68_05625) | - | 1275143..1275571 (+) | 429 | WP_322220929.1 | phage tail assembly chaperone | - |
| RHM68_RS05630 (RHM68_05630) | - | 1275670..1275855 (+) | 186 | WP_322220930.1 | hypothetical protein | - |
| RHM68_RS05635 (RHM68_05635) | - | 1275857..1277023 (+) | 1167 | WP_322220931.1 | phage tail protein | - |
| RHM68_RS05640 (RHM68_05640) | - | 1277023..1277529 (+) | 507 | WP_322220932.1 | phage major tail tube protein | - |
| RHM68_RS05645 (RHM68_05645) | - | 1277726..1278322 (+) | 597 | WP_322220933.1 | phage tail assembly protein | - |
| RHM68_RS05650 (RHM68_05650) | - | 1278451..1280568 (+) | 2118 | WP_322220934.1 | phage tail tape measure protein | - |
| RHM68_RS05655 (RHM68_05655) | - | 1280568..1280951 (+) | 384 | WP_322220935.1 | phage tail protein | - |
| RHM68_RS05660 (RHM68_05660) | - | 1280944..1281156 (+) | 213 | WP_322220936.1 | tail protein X | - |
| RHM68_RS05665 (RHM68_05665) | - | 1281166..1282182 (+) | 1017 | WP_322220937.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| RHM68_RS05670 (RHM68_05670) | - | 1282712..1283143 (+) | 432 | WP_322223700.1 | phage tail assembly chaperone | - |
| RHM68_RS05675 (RHM68_05675) | - | 1283181..1283744 (+) | 564 | WP_322220938.1 | glycoside hydrolase family 19 protein | - |
| RHM68_RS05680 (RHM68_05680) | - | 1283726..1284262 (+) | 537 | WP_322220939.1 | lysis system i-spanin subunit Rz | - |
| RHM68_RS05685 (RHM68_05685) | - | 1284343..1284843 (+) | 501 | WP_322220940.1 | CinA family protein | - |
| RHM68_RS05690 (RHM68_05690) | recA | 1284927..1285979 (+) | 1053 | WP_322220941.1 | recombinase RecA | Machinery gene |
| RHM68_RS05695 (RHM68_05695) | recX | 1285988..1286455 (+) | 468 | WP_322220942.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37196.74 Da Isoelectric Point: 5.8639
>NTDB_id=876711 RHM68_RS05690 WP_322220941.1 1284927..1285979(+) (recA) [Pseudomonas sp. DC1.2]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLAPVADVKASPVKENAADLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLAPVADVKASPVKENAADLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=876711 RHM68_RS05690 WP_322220941.1 1284927..1285979(+) (recA) [Pseudomonas sp. DC1.2]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GTCTGCCAAGAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACGCTGTCTGTTATCGCT
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTTGTCGACGCCGAACACGCCCTCGATCCTGAGTACGCCGGCAAACTGGG
TGTCAACGTAGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAGGCCTTGGAAATTACCGACATGCTGGTGCGCT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTAGCCGCTCTGGTGCCAAAAGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTCGGCCTGCAAGCCCGTCTCATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAATGCCAACTGTTT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTAATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGGCTGGATATCCGCCGCACGGGGGCCGTGAAAGAAGGCGATGAAGTCGTTGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAAAACAAGGTTGCTTCGCCGTTCCGCCAAGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
TTACCTCAACGGCGAGATGATCGACTTGGGCGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCTTGGTACGCCTATAACG
GCACCAAAATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAATCGCCGCGACGTTGGAGAAG
CAACTGCGCGATAAGCTGCTGGCTCCAGTGGCTGACGTAAAAGCATCGCCAGTCAAAGAGAATGCAGCCGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GTCTGCCAAGAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACGCTGTCTGTTATCGCT
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTTGTCGACGCCGAACACGCCCTCGATCCTGAGTACGCCGGCAAACTGGG
TGTCAACGTAGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAGGCCTTGGAAATTACCGACATGCTGGTGCGCT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTAGCCGCTCTGGTGCCAAAAGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTCGGCCTGCAAGCCCGTCTCATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAATGCCAACTGTTT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTAATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGGCTGGATATCCGCCGCACGGGGGCCGTGAAAGAAGGCGATGAAGTCGTTGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAAAACAAGGTTGCTTCGCCGTTCCGCCAAGCCGAGTTCCAGATTCTTTATGGCAAGGGCAT
TTACCTCAACGGCGAGATGATCGACTTGGGCGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCTTGGTACGCCTATAACG
GCACCAAAATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAATCGCCGCGACGTTGGAGAAG
CAACTGCGCGATAAGCTGCTGGCTCCAGTGGCTGACGTAAAAGCATCGCCAGTCAAAGAGAATGCAGCCGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.