Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHM61_RS02290 Genome accession   NZ_CP133779
Coordinates   477931..478989 (-) Length   352 a.a.
NCBI ID   WP_322249515.1    Uniprot ID   A0AAU0S9U5
Organism   Undibacterium sp. CCC3.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472931..483989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS02265 (RHM61_02265) - 473526..474332 (-) 807 WP_322249511.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  RHM61_RS02270 (RHM61_02270) sucD 474490..475371 (-) 882 WP_322249512.1 succinate--CoA ligase subunit alpha -
  RHM61_RS02275 (RHM61_02275) sucC 475390..476559 (-) 1170 WP_322249513.1 ADP-forming succinate--CoA ligase subunit beta -
  RHM61_RS02280 (RHM61_02280) - 476606..477196 (-) 591 WP_322251025.1 DUF2889 domain-containing protein -
  RHM61_RS02285 (RHM61_02285) recX 477370..477825 (-) 456 WP_322249514.1 recombination regulator RecX -
  RHM61_RS02290 (RHM61_02290) recA 477931..478989 (-) 1059 WP_322249515.1 recombinase RecA Machinery gene
  RHM61_RS02295 (RHM61_02295) - 479447..479869 (+) 423 WP_322249516.1 type II toxin-antitoxin system VapC family toxin -
  RHM61_RS02300 (RHM61_02300) adh 480065..481585 (+) 1521 WP_322249517.1 aldehyde dehydrogenase -
  RHM61_RS02305 (RHM61_02305) - 481661..482044 (+) 384 WP_322249518.1 DUF779 domain-containing protein -
  RHM61_RS02310 (RHM61_02310) - 482115..482363 (+) 249 WP_322249519.1 DUF3297 family protein -
  RHM61_RS02315 (RHM61_02315) - 482464..483177 (+) 714 WP_322249520.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37528.96 Da        Isoelectric Point: 5.8812

>NTDB_id=876687 RHM61_RS02290 WP_322249515.1 477931..478989(-) (recA) [Undibacterium sp. CCC3.4]
MDDKKSDNSSEKSKALAAALAQIEKQFGKGSVMRMADGAVVEEIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQAIAEMQKIGGTCAFIDAEHALDVGYAQKLGVNLNELLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKVAPPFKEAHFDILYGEGTSREGEILDLGADAKIIEKAGAWYSYNGERIGQGKDNARNFLRERP
ALAYEIENKVRAHLNVPLLPPPLQTAAPVAAA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=876687 RHM61_RS02290 WP_322249515.1 477931..478989(-) (recA) [Undibacterium sp. CCC3.4]
ATGGACGATAAGAAATCTGACAACAGCTCAGAAAAGAGCAAGGCGCTGGCCGCAGCGCTGGCACAAATCGAGAAGCAATT
CGGCAAGGGTTCCGTCATGCGCATGGCTGATGGTGCCGTGGTGGAAGAAATTCAAGTGGTTTCGACCGGTTCACTCGGCC
TCGATATCGCGCTTGGCGTCGGTGGTTTGCCACGCGGCCGAGTTGTTGAAATTTACGGTCCGGAATCATCGGGTAAAACG
ACCTTGACCCTGCAAGCTATTGCAGAAATGCAGAAAATCGGCGGCACTTGCGCCTTTATCGATGCCGAACATGCGCTTGA
TGTCGGTTATGCGCAAAAGCTTGGCGTCAATCTCAATGAATTACTGATTTCGCAACCAGATACTGGCGAACAGGCATTGG
AAATCACTGACGCCCTGGTACGCTCGGGCAGTGTTGATCTGATCGTCATCGATTCGGTCGCCGCGCTCACGCCGCGTGCT
GAAATCGAAGGCGATATGGGTGATTCCTTGCCGGGTCTGCAAGCGCGTCTGATGTCGCAAGCGCTGCGCAAGCTGACAGG
CAGTATCAAACGTACTAATACTTTGGTGATTTTCATTAACCAAATCCGTATGAAAATCGGCGTCATGTTCGGCAGCCCGG
AAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCTTCGGTGCGCCTCGATATCCGTCGTACCGGTTCGATCAAATCG
GGCGATGAAGTGATTGGCAATGAAACCAAGGTGAAAGTCGTCAAAAATAAAGTCGCGCCACCATTTAAAGAAGCGCATTT
CGATATTCTTTATGGGGAAGGCACTTCACGCGAAGGTGAAATCCTCGATCTCGGGGCCGATGCGAAAATCATCGAAAAAG
CTGGTGCATGGTATAGCTATAATGGCGAACGCATCGGTCAGGGTAAAGATAATGCACGTAATTTCCTCAGAGAACGTCCA
GCATTGGCGTATGAAATTGAAAACAAAGTCCGCGCCCATTTGAACGTACCTTTGTTGCCACCGCCTTTGCAAACGGCAGC
GCCTGTCGCAGCGGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.728

96.023

0.804
  recA Acinetobacter baylyi ADP1

69.741

98.58

0.688
  recA Neisseria gonorrhoeae MS11

74.074

92.045

0.682
  recA Neisseria gonorrhoeae MS11

74.074

92.045

0.682
  recA Neisseria gonorrhoeae strain FA1090

74.074

92.045

0.682
  recA Pseudomonas stutzeri DSM 10701

70.501

96.307

0.679
  recA Vibrio cholerae strain A1552

68.622

96.875

0.665
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.622

96.875

0.665
  recA Acinetobacter baumannii D1279779

72.136

91.761

0.662
  recA Glaesserella parasuis strain SC1401

71.605

92.045

0.659
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.169

94.318

0.634
  recA Helicobacter pylori 26695

63.284

95.17

0.602
  recA Helicobacter pylori strain NCTC11637

62.985

95.17

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.815

92.045

0.597
  recA Streptococcus pyogenes NZ131

63.72

93.182

0.594
  recA Streptococcus mutans UA159

63.609

92.898

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

92.614

0.591
  recA Streptococcus pneumoniae D39

62.538

94.034

0.588
  recA Streptococcus pneumoniae TIGR4

62.538

94.034

0.588
  recA Streptococcus pneumoniae R6

62.538

94.034

0.588
  recA Streptococcus pneumoniae Rx1

62.538

94.034

0.588
  recA Lactococcus lactis subsp. cremoris KW2

61.607

95.455

0.588
  recA Streptococcus mitis NCTC 12261

60.882

96.591

0.588
  recA Streptococcus mitis SK321

60.882

96.591

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

93.75

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

93.182

0.582