Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHM56_RS03480 Genome accession   NZ_CP133778
Coordinates   768396..769508 (+) Length   370 a.a.
NCBI ID   WP_322238570.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763396..774508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS03460 (RHM56_03460) mutS 763576..766155 (-) 2580 WP_322238562.1 DNA mismatch repair protein MutS -
  RHM56_RS03465 (RHM56_03465) - 766348..767082 (+) 735 WP_322238564.1 XRE family transcriptional regulator -
  RHM56_RS03470 (RHM56_03470) - 767358..767702 (+) 345 WP_322238566.1 phage holin family protein -
  RHM56_RS03475 (RHM56_03475) - 767811..768290 (+) 480 WP_322238568.1 CinA family protein -
  RHM56_RS03480 (RHM56_03480) recA 768396..769508 (+) 1113 WP_322238570.1 recombinase RecA Machinery gene
  RHM56_RS03485 (RHM56_03485) recX 769517..769984 (+) 468 WP_322238572.1 recombination regulator RecX -
  RHM56_RS03490 (RHM56_03490) - 770144..771265 (-) 1122 WP_322238574.1 LOG family protein -
  RHM56_RS03495 (RHM56_03495) - 771466..771876 (-) 411 WP_322238576.1 PA3611 family quorum-sensing-regulated virulence factor -
  RHM56_RS03500 (RHM56_03500) - 772107..772853 (+) 747 WP_322241693.1 tRNA-uridine aminocarboxypropyltransferase -
  RHM56_RS03505 (RHM56_03505) erdR 773292..773942 (+) 651 WP_322238578.1 response regulator transcription factor ErdR -
  RHM56_RS03510 (RHM56_03510) - 774018..774380 (+) 363 WP_003443016.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39434.22 Da        Isoelectric Point: 5.1836

>NTDB_id=876666 RHM56_RS03480 WP_322238570.1 768396..769508(+) (recA) [Pseudomonas sp. CCC3.1]
MDDNKKKALAAALGQIERQFGKGAVMLMGDQERQAVPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIIDSVAALTPKAEIEGDMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGDVVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKAGAWYSYNGSKIGQGKANSAKFLDENPDIKDALEK
QLRAKLLGPKTDSELAELKTMPKLSKAAKAAADEAEAAEMELENSAENDN

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=876666 RHM56_RS03480 WP_322238570.1 768396..769508(+) (recA) [Pseudomonas sp. CCC3.1]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGCGCCGTCATGCT
GATGGGCGATCAAGAGCGCCAGGCAGTGCCGGCTATCTCGACCGGTTCGCTGGGTCTGGACATCGCACTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCAGAATCTTCGGGTAAAACCACCCTGACGCTGTCTGTAATTGCA
CAGGCGCAAAAAGCGGGCGCAACCTGTGCCTTCGTCGATGCCGAGCATGCCCTTGATCCAGAATATGCGGCCAAGCTGGG
TGTAAACGTTGATGACCTGCTGGTTTCGCAGCCAGATACGGGTGAGCAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCTGTTGACGTAATCATCATCGACTCCGTGGCAGCCCTGACTCCCAAGGCTGAAATTGAAGGCGACATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCGCAAGCGCTGCGTAAAATCACCGGCAACATCAAAAACGCCAACTGTCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACGGGTGGTAACGCAC
TGAAATTCTACTCGTCGGTACGTCTGGACATTCGCCGCACCGGTGCTGTGAAAGAAGGCGATGTAGTCGTCGGCAGCGAA
ACTCGCGTCAAAGTGGTCAAGAACAAAGTGGCACCGCCATTCCGTCAGGCTGAGTTCCAGATTCTTTACGGCAAAGGTAT
CTACCTCAACGGTGAAATGATCGACCTGGGCGTATTGCACGGCTTCGTCGAGAAAGCCGGTGCCTGGTACAGCTACAACG
GCAGCAAAATCGGTCAGGGCAAGGCGAACTCCGCCAAGTTCCTCGACGAAAACCCGGACATCAAGGACGCCCTCGAGAAG
CAACTGCGCGCCAAACTGTTGGGCCCAAAGACTGACAGTGAGCTGGCAGAGCTGAAGACCATGCCGAAGTTGAGCAAAGC
TGCCAAAGCGGCTGCTGATGAAGCTGAAGCAGCAGAAATGGAACTGGAAAACTCTGCTGAAAACGATAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.379

88.378

0.781
  recA Acinetobacter baylyi ADP1

73.824

91.892

0.678
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.997

91.081

0.665
  recA Vibrio cholerae strain A1552

72.997

91.081

0.665
  recA Acinetobacter baumannii D1279779

73.494

89.73

0.659
  recA Glaesserella parasuis strain SC1401

72.84

87.568

0.638
  recA Ralstonia pseudosolanacearum GMI1000

69.851

90.541

0.632
  recA Neisseria gonorrhoeae MS11

72

87.838

0.632
  recA Neisseria gonorrhoeae MS11

72

87.838

0.632
  recA Neisseria gonorrhoeae strain FA1090

72

87.838

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

88.378

0.568
  recA Helicobacter pylori strain NCTC11637

58.841

93.243

0.549
  recA Helicobacter pylori 26695

58.261

93.243

0.543
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

89.459

0.541
  recA Streptococcus mutans UA159

60.245

88.378

0.532
  recA Bacillus subtilis subsp. subtilis str. 168

61.562

86.486

0.532
  recA Streptococcus mitis NCTC 12261

57.522

91.622

0.527
  recA Streptococcus pyogenes NZ131

58.232

88.649

0.516
  recA Streptococcus pneumoniae R6

58.589

88.108

0.516
  recA Streptococcus pneumoniae Rx1

58.589

88.108

0.516
  recA Streptococcus pneumoniae D39

58.589

88.108

0.516
  recA Streptococcus pneumoniae TIGR4

58.589

88.108

0.516
  recA Lactococcus lactis subsp. cremoris KW2

56.25

90.811

0.511
  recA Streptococcus mitis SK321

57.669

88.108

0.508
  recA Latilactobacillus sakei subsp. sakei 23K

58.075

87.027

0.505
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

87.568

0.497