Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHM62_RS18295 Genome accession   NZ_CP133777
Coordinates   3968880..3969992 (-) Length   370 a.a.
NCBI ID   WP_009666155.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3963880..3974992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS18270 (RHM62_18270) - 3964538..3965272 (-) 735 WP_322125447.1 TerC family protein -
  RHM62_RS18275 (RHM62_18275) sucD 3965398..3966279 (-) 882 WP_322123447.1 succinate--CoA ligase subunit alpha -
  RHM62_RS18280 (RHM62_18280) sucC 3966315..3967481 (-) 1167 WP_322123448.1 ADP-forming succinate--CoA ligase subunit beta -
  RHM62_RS18285 (RHM62_18285) - 3967524..3968108 (-) 585 WP_322123449.1 DUF2889 domain-containing protein -
  RHM62_RS18290 (RHM62_18290) recX 3968348..3968833 (-) 486 WP_322123450.1 recombination regulator RecX -
  RHM62_RS18295 (RHM62_18295) recA 3968880..3969992 (-) 1113 WP_009666155.1 recombinase RecA Machinery gene
  RHM62_RS18300 (RHM62_18300) - 3970199..3971224 (+) 1026 WP_322123451.1 hypothetical protein -
  RHM62_RS18305 (RHM62_18305) - 3971371..3972000 (-) 630 WP_322123452.1 hypothetical protein -
  RHM62_RS18310 (RHM62_18310) - 3972515..3973201 (+) 687 WP_322123453.1 response regulator transcription factor -
  RHM62_RS18315 (RHM62_18315) - 3973203..3974732 (+) 1530 WP_322123454.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39262.94 Da        Isoelectric Point: 5.6269

>NTDB_id=876660 RHM62_RS18295 WP_009666155.1 3968880..3969992(-) (recA) [Actimicrobium sp. CCC2.4]
MDDKKAVSGSDKSKALAAALAQIEKQFGKGSVMRMADGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLSELLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKIAPPFREAHFDILYGEGVSREGEILDLGADAKIVEKAGAWYSYNGERIGQGKDNARTFLKERP
ELAREIENKVRVSLGVPELGALKGTEPAKKKAADKAADKAAIEGKDVVAE

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=876660 RHM62_RS18295 WP_009666155.1 3968880..3969992(-) (recA) [Actimicrobium sp. CCC2.4]
ATGGACGACAAAAAAGCCGTATCCGGTTCAGATAAAAGCAAGGCGCTGGCCGCAGCGCTGGCCCAGATTGAAAAACAGTT
CGGCAAAGGTTCGGTCATGCGCATGGCTGACGGTGCAGTGGTCGAAGAAGTCCAGGTCGTCTCGACCGGCTCGCTCGGCC
TCGATATCGCGCTCGGCGTCGGTGGCTTGCCACGCGGCCGTGTCGTCGAAATCTACGGTCCAGAATCCTCCGGCAAAACC
ACGCTGACGCTGCAAACCATCGCCGAAATGCAAAAGCTGGGCGGCACCTGTGCCTTCATCGATGCCGAACACGCGCTCGA
TGTCGGCTACGCCCAGAAGCTGGGTATCAACCTGTCCGAACTGCTGATCTCGCAGCCCGATACCGGCGAACAGGCCCTTG
AAATTACCGATGCGCTGGTGCGCTCGGGCGGCGTCGACCTGATCGTCATCGACTCGGTCGCGGCCTTGACGCCACGTGCC
GAAATCGAAGGCGACATGGGTGACTCGCTGCCGGGCCTGCAGGCACGACTGATGTCGCAAGCACTGCGCAAGCTGACCGG
TTCGATCAACCGCACCAACACGCTGGTCATCTTCATCAACCAGATCCGCATGAAAATCGGCGTCATGTTCGGCAATCCCG
AAACCACCACCGGCGGCAATGCCCTGAAGTTCTATGCGTCGGTGCGGCTCGACATCCGTCGTACCGGTTCGATCAAGTCC
GGCGACGAAGTCATCGGCAACGAAACCAAAGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCATTTCGAGAAGCGCATTT
CGACATCCTGTATGGCGAAGGCGTATCCCGTGAAGGTGAAATCCTCGACCTCGGTGCCGATGCCAAGATCGTTGAAAAAG
CCGGAGCCTGGTACAGCTACAACGGCGAACGGATCGGCCAGGGCAAGGACAATGCACGGACCTTCCTGAAAGAGCGTCCC
GAGCTGGCCCGCGAAATCGAAAACAAGGTGCGTGTCTCGCTGGGCGTGCCTGAACTGGGCGCCCTCAAAGGTACCGAGCC
GGCCAAGAAAAAAGCGGCTGACAAAGCCGCCGACAAAGCCGCGATCGAAGGCAAGGATGTCGTCGCCGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.918

92.432

0.776
  recA Neisseria gonorrhoeae MS11

72.024

90.811

0.654
  recA Neisseria gonorrhoeae strain FA1090

72.024

90.811

0.654
  recA Neisseria gonorrhoeae MS11

72.024

90.811

0.654
  recA Acinetobacter baylyi ADP1

70.958

90.27

0.641
  recA Glaesserella parasuis strain SC1401

69.208

92.162

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.341

88.649

0.632
  recA Vibrio cholerae strain A1552

71.341

88.649

0.632
  recA Pseudomonas stutzeri DSM 10701

71.296

87.568

0.624
  recA Acinetobacter baumannii D1279779

70.679

87.568

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.781

88.919

0.603
  recA Streptococcus mutans UA159

60.845

95.946

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.501

91.081

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

63.964

90

0.576
  recA Helicobacter pylori 26695

64.438

88.919

0.573
  recA Helicobacter pylori strain NCTC11637

64.134

88.919

0.57
  recA Streptococcus mitis SK321

60.807

93.784

0.57
  recA Streptococcus pyogenes NZ131

63.142

89.459

0.565
  recA Streptococcus pneumoniae Rx1

62.349

89.73

0.559
  recA Streptococcus pneumoniae D39

62.349

89.73

0.559
  recA Streptococcus mitis NCTC 12261

62.349

89.73

0.559
  recA Streptococcus pneumoniae R6

62.349

89.73

0.559
  recA Streptococcus pneumoniae TIGR4

62.349

89.73

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.706

91.892

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

87.838

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

61.094

88.919

0.543