Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RHM64_RS06240 Genome accession   NZ_CP133776
Coordinates   1425739..1426797 (+) Length   352 a.a.
NCBI ID   WP_322168105.1    Uniprot ID   -
Organism   Pseudomonas sp. AH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1420739..1431797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM64_RS06225 (RHM64_06225) mutS 1421241..1423808 (-) 2568 WP_322170794.1 DNA mismatch repair protein MutS -
  RHM64_RS06230 (RHM64_06230) - 1424233..1424559 (-) 327 WP_322168103.1 YceK/YidQ family lipoprotein -
  RHM64_RS06235 (RHM64_06235) - 1425130..1425636 (+) 507 WP_322168104.1 CinA family protein -
  RHM64_RS06240 (RHM64_06240) recA 1425739..1426797 (+) 1059 WP_322168105.1 recombinase RecA Machinery gene
  RHM64_RS06245 (RHM64_06245) recX 1426810..1427277 (+) 468 WP_322168106.1 recombination regulator RecX -
  RHM64_RS06250 (RHM64_06250) - 1427290..1428408 (-) 1119 WP_322168107.1 TIGR00730 family Rossman fold protein -
  RHM64_RS06255 (RHM64_06255) - 1428613..1429023 (-) 411 WP_322168108.1 quorum-sensing-regulated virulence factor family protein -
  RHM64_RS06260 (RHM64_06260) - 1429274..1429984 (+) 711 WP_322168109.1 tRNA-uridine aminocarboxypropyltransferase -
  RHM64_RS06265 (RHM64_06265) - 1430067..1430990 (-) 924 WP_322170798.1 DMT family transporter -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37506.15 Da        Isoelectric Point: 5.8046

>NTDB_id=876615 RHM64_RS06240 WP_322168105.1 1425739..1426797(+) (recA) [Pseudomonas sp. AH2]
MDENKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLAVLHGFVEKSGAWYSYQGSKIGQGKANSAKFLADNPEVGATLEK
LIRDKLLTPGVDTKAVSSRVPADDLAEADVDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=876615 RHM64_RS06240 WP_322168105.1 1425739..1426797(+) (recA) [Pseudomonas sp. AH2]
ATGGACGAGAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAATTCGGCAAAGGTGCCGTAATGCG
CATGGGCGACCATGACCGCCAGGCGATTCCTGCTATCTCCACCGGTTCGCTGGGTCTTGATATCGCGCTGGGTATTGGTG
GCTTGCCCAAAGGTCGGATCGTTGAAATCTACGGTCCAGAATCTTCGGGCAAAACCACGCTGACGCTTTCGGTTATTGCT
CAGGCTCAAAAAATGGGCGCTACCTGCGCATTCGTCGATGCCGAACACGCATTGGACCCTGAGTACGCAGGCAAACTGGG
CGTCAATGTCGACGATCTGCTGGTTTCGCAGCCGGATACTGGTGAACAAGCGCTGGAAATCACCGACATGTTGGTGCGTT
CCAACGCCATTGACGTCATCGTGATCGACTCCGTGGCCGCACTGGTGCCTAAAGCCGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTCGGTCTGCAGGCACGTTTGATGTCTCAGGCATTGCGGAAAATCACCGGCAACATCAAAAATGCAAACTGCCT
GGTTATTTTCATCAACCAGATTCGGATGAAAATTGGCGTCATGTTCGGCAGCCCGGAAACGACTACCGGCGGTAACGCAC
TGAAGTTCTACGCTTCTGTCCGTCTGGATATCCGCCGCACTGGCGCGGTAAAAGAAGGCGATGAAGTCGTCGGCAGTGAA
ACCCGCGTCAAGGTCGTGAAAAACAAAGTGGCTCCGCCGTTCCGTCAGGCAGAGTTCCAGATTCTCTACGGTAAGGGTAT
TTACCTTAACGGCGAAATCATTGACCTGGCTGTGCTTCACGGTTTCGTCGAGAAATCCGGTGCATGGTACAGCTATCAAG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTAGGCGCAACACTGGAGAAA
CTGATCCGTGACAAACTGCTGACTCCGGGCGTTGACACCAAGGCAGTAAGCTCCCGAGTGCCTGCTGACGATTTAGCTGA
AGCTGACGTCGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.714

99.432

0.872
  recA Acinetobacter baylyi ADP1

73.352

99.148

0.727
  recA Acinetobacter baumannii D1279779

75.301

94.318

0.71
  recA Vibrio cholerae strain A1552

71.884

98.011

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.884

98.011

0.705
  recA Glaesserella parasuis strain SC1401

69.714

99.432

0.693
  recA Neisseria gonorrhoeae MS11

71.296

92.045

0.656
  recA Neisseria gonorrhoeae MS11

71.296

92.045

0.656
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.045

0.656
  recA Ralstonia pseudosolanacearum GMI1000

73.016

89.489

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.952

94.318

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

94.886

0.591
  recA Helicobacter pylori strain NCTC11637

65.064

88.636

0.577
  recA Helicobacter pylori 26695

64.423

88.636

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

59.459

94.602

0.562
  recA Streptococcus mutans UA159

59.692

92.33

0.551
  recA Streptococcus mitis SK321

59.259

92.045

0.545
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Streptococcus pyogenes NZ131

57.927

93.182

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

60.256

88.636

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.055

92.614

0.528
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526