Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RFF38_RS08280 Genome accession   NZ_CP133638
Coordinates   1733093..1734157 (+) Length   354 a.a.
NCBI ID   WP_005724816.1    Uniprot ID   P95526
Organism   Pasteurella multocida strain Past9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728093..1739157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFF38_RS08275 (RFF38_08275) - 1731185..1732783 (-) 1599 WP_249984463.1 SrfA family protein -
  RFF38_RS08280 (RFF38_08280) recA 1733093..1734157 (+) 1065 WP_005724816.1 recombinase RecA Machinery gene
  RFF38_RS08285 (RFF38_08285) recX 1734267..1734725 (+) 459 WP_249984462.1 recombination regulator RecX -
  RFF38_RS08290 (RFF38_08290) - 1734825..1736090 (-) 1266 WP_010907354.1 heme biosynthesis protein HemY -
  RFF38_RS08295 (RFF38_08295) - 1736103..1737503 (-) 1401 WP_096743368.1 uroporphyrinogen-III C-methyltransferase -
  RFF38_RS08300 (RFF38_08300) - 1737544..1738290 (-) 747 WP_005724810.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37906.53 Da        Isoelectric Point: 5.1857

>NTDB_id=875404 RFF38_RS08280 WP_005724816.1 1733093..1734157(+) (recA) [Pasteurella multocida strain Past9]
MATKEEKNKALAAALGQIEKQFGKGSIMKLGDTQALDVEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIG
NETRVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIGQGKANAMKWLEEHPEEALAL
ETKLRNELLANPEKVLAADIAEKNESSTGLEADY

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=875404 RFF38_RS08280 WP_005724816.1 1733093..1734157(+) (recA) [Pasteurella multocida strain Past9]
ATGGCAACAAAAGAAGAAAAAAATAAAGCACTGGCAGCAGCACTTGGGCAGATTGAAAAACAATTTGGTAAAGGCTCTAT
TATGAAATTGGGCGATACCCAAGCCTTGGATGTTGAAGCCGTGTCAACCGGCTCATTAAGCCTTGACGTCGCACTTGGCA
TTGGCGGGTTACCAATGGGCCGTATTGTTGAAATTTTCGGGCCTGAATCTTCCGGTAAAACCACCTTAACCCTTTCTGTC
ATTGCACAAGCACAAAAAGAAGGCAAAACCTGTGCCTTTATTGATGCCGAACACGCATTAGATCCTATTTATGCGGCAAA
ACTTGGCGTCAATGTGAATGAACTGTTAGTTTCCCAACCTGATAACGGTGAACAAGCACTCGAAATTTGCGATGCGTTAG
TGCGTTCAGGTGCAGTAGATGTGATCATCGTGGACTCTGTCGCAGCATTAACCCCGAAAGCGGAAATTGAAGGGGAAATG
GGTGACTCACACATGGGTTTACAAGCACGTTTGATGTCACAAGCGTTACGTAAACTCACTGGACAAATCAAAAACTCAAA
TTGCTTAGTGGTCTTTATTAACCAAATCCGTATGAAAATTGGTGTCATGTTCGGTAACCCAGAAACCACAACAGGGGGGA
ATGCACTGAAATTCTATGCCTCTGTACGTTTAGATATTCGCCGTACGGGTGCGATTAAAGAGGGTGAAGAAGTGATCGGT
AACGAAACCCGTGTCAAAGTGGTGAAAAATAAAGTGGCGGCACCATTCCGTCAAGTAGATTTCCAAATTCTTTACGGTCA
AGGCATTTCTAAAACAGGCGAGCTCATCGAGTTAGGCGTAAAACACAAATTAGTGGATAAAGCAGGTGCATGGTACGCTT
ACAATGGTGAAAAAATCGGTCAAGGTAAAGCTAACGCGATGAAATGGTTAGAAGAGCATCCCGAAGAAGCATTGGCTTTA
GAAACGAAATTACGCAATGAGTTGCTCGCGAATCCAGAAAAAGTACTCGCGGCAGACATTGCGGAAAAAAATGAAAGCTC
TACGGGCTTAGAAGCGGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P95526

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.967

93.503

0.757
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.967

93.503

0.757
  recA Glaesserella parasuis strain SC1401

76.385

96.893

0.74
  recA Pseudomonas stutzeri DSM 10701

75.148

95.48

0.718
  recA Acinetobacter baylyi ADP1

71.557

94.35

0.675
  recA Acinetobacter baumannii D1279779

72.308

91.808

0.664
  recA Neisseria gonorrhoeae MS11

72.981

90.96

0.664
  recA Neisseria gonorrhoeae MS11

72.981

90.96

0.664
  recA Neisseria gonorrhoeae strain FA1090

72.981

90.96

0.664
  recA Ralstonia pseudosolanacearum GMI1000

73.016

88.983

0.65
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.349

93.785

0.585
  recA Helicobacter pylori strain NCTC11637

60.947

95.48

0.582
  recA Streptococcus pneumoniae D39

58.239

99.435

0.579
  recA Streptococcus pneumoniae Rx1

58.239

99.435

0.579
  recA Streptococcus pneumoniae R6

58.239

99.435

0.579
  recA Streptococcus pneumoniae TIGR4

58.239

99.435

0.579
  recA Helicobacter pylori 26695

60.355

95.48

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

91.808

0.573
  recA Streptococcus mitis NCTC 12261

57.345

100

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.125

90.395

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

92.373

0.568
  recA Streptococcus mutans UA159

56.657

99.718

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

90.96

0.551
  recA Streptococcus mitis SK321

60.185

91.525

0.551
  recA Streptococcus pyogenes NZ131

59.692

91.808

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.951

91.525

0.54