Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCV51_RS09215 Genome accession   NZ_CP133611
Coordinates   1966331..1967413 (-) Length   360 a.a.
NCBI ID   WP_013178626.1    Uniprot ID   -
Organism   Truepera radiovictrix strain CIP 108686     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961331..1972413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCV51_RS09190 (RCV51_09190) - 1961790..1962233 (+) 444 WP_013178631.1 arsenate reductase ArsC -
  RCV51_RS09195 (RCV51_09195) pth 1962230..1962832 (-) 603 WP_013178630.1 aminoacyl-tRNA hydrolase -
  RCV51_RS09200 (RCV51_09200) - 1962813..1963439 (-) 627 WP_013178629.1 50S ribosomal protein L25 -
  RCV51_RS09205 (RCV51_09205) - 1963470..1964411 (-) 942 WP_013178628.1 ribose-phosphate pyrophosphokinase -
  RCV51_RS09210 (RCV51_09210) rny 1964661..1966331 (-) 1671 WP_013178627.1 ribonuclease Y -
  RCV51_RS09215 (RCV51_09215) recA 1966331..1967413 (-) 1083 WP_013178626.1 recombinase RecA Machinery gene
  RCV51_RS09220 (RCV51_09220) - 1967630..1968868 (-) 1239 WP_013178625.1 competence/damage-inducible protein A -
  RCV51_RS09225 (RCV51_09225) - 1968949..1970904 (-) 1956 WP_013178624.1 sodium:proton antiporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38084.47 Da        Isoelectric Point: 6.1722

>NTDB_id=875295 RCV51_RS09215 WP_013178626.1 1966331..1967413(-) (recA) [Truepera radiovictrix strain CIP 108686]
MKDTDNPSAPSGAPPQLDPARRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQGVIPTGSMSVDLALGVGGVPRGRIIEI
YGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGEQALEITELLVRSGAVDVVVVD
SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALAKSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLE
VRRKGDVKSGADKVGNQVRVKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKEK
AASYLLDNPHLIDALRQRVVAAVRGGAEAGDEVDALRGGA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=875295 RCV51_RS09215 WP_013178626.1 1966331..1967413(-) (recA) [Truepera radiovictrix strain CIP 108686]
ATGAAGGACACCGACAATCCCTCCGCCCCCTCGGGGGCGCCACCACAGCTCGACCCCGCACGGCGGCGGAGCCTGGAGAG
CACGCTGTCGCAGATCGAGAAGCAGTTCGGCAAGGGCGCCATCATGCGCCTCGGCGACGACCGCTCGCTACTCGACCAGG
GCGTCATCCCCACCGGCTCGATGTCCGTCGACCTCGCCCTGGGCGTCGGCGGCGTCCCCAGAGGCCGCATCATCGAGATC
TACGGCCCCGAGTCCGGCGGCAAAACCACCCTCTCCTTGCACGTCATCGCCGAAGCCCAGCGCCTGGGCGGCGTCGCCGC
TTTTGTCGACGCCGAGCACGCGCTCGACCCCACCTACGCCAAAGCCCTGGGCGTCGACACCGACGAACTCCTCGTCTCCC
AACCCGACACCGGCGAGCAAGCTTTGGAGATCACCGAGCTCCTGGTCCGCTCCGGCGCGGTCGACGTGGTGGTGGTCGAC
TCGGTCGCCGCTTTGGTCCCCAGAGCCGAGATCGAGGGCGAGATGGGCGACGCCCACGTCGGTCTGCAAGCCCGGCTCAT
GAGCCAAGCCCTGCGCAAGCTCACCGGCGCGCTCGCCAAAAGCCGCACCACCGCCATTTTCATCAACCAGATCCGCGAAA
AGATCGGCGTCATGTACGGCAACCCCGAGACCACCCCGGGGGGGCGGGCGCTCAAGTTCTACGCCTCGGTCCGTTTGGAG
GTCCGCCGCAAGGGCGACGTCAAGTCCGGCGCCGACAAGGTCGGCAACCAGGTGCGGGTCAAGGTGACCAAGAACAAGGT
GGCCCCGCCCTTTAAAGAAGCCGAGGTCGAGATCCTCTTCGGCAAAGGCATCGACAAGCTCGGCGACCTCATCACCATCG
CCACCGACTTAGACCTCATCCAAAAGTCCGGCTCCTTTTACAAGTACGACGGCGTTACCATCGGTCAGGGCAAGGAAAAA
GCCGCTAGCTACCTCCTCGACAACCCCCACCTCATCGACGCTTTGCGCCAACGCGTCGTCGCCGCCGTCCGGGGGGGGGC
GGAAGCCGGGGATGAGGTGGACGCCCTGCGTGGGGGCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.698

95.556

0.628
  recA Pseudomonas stutzeri DSM 10701

64.417

90.556

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

64.89

88.611

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

90

0.569
  recA Streptococcus mitis NCTC 12261

62.539

89.722

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

89.722

0.558
  recA Streptococcus pyogenes NZ131

62.229

89.722

0.558
  recA Streptococcus mitis SK321

62.229

89.722

0.558
  recA Vibrio cholerae strain A1552

62.229

89.722

0.558
  recA Streptococcus pneumoniae R6

61.92

89.722

0.556
  recA Streptococcus pneumoniae Rx1

61.92

89.722

0.556
  recA Streptococcus pneumoniae D39

61.92

89.722

0.556
  recA Streptococcus pneumoniae TIGR4

61.92

89.722

0.556
  recA Acinetobacter baylyi ADP1

58.187

95

0.553
  recA Glaesserella parasuis strain SC1401

58.235

94.444

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.494

90

0.544
  recA Streptococcus mutans UA159

60.681

89.722

0.544
  recA Acinetobacter baumannii D1279779

60.372

89.722

0.542
  recA Helicobacter pylori 26695

58.559

92.5

0.542
  recA Helicobacter pylori strain NCTC11637

58.559

92.5

0.542
  recA Neisseria gonorrhoeae MS11

62.701

86.389

0.542
  recA Neisseria gonorrhoeae MS11

62.701

86.389

0.542
  recA Neisseria gonorrhoeae strain FA1090

62.701

86.389

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.282

90.556

0.528
  recA Ralstonia pseudosolanacearum GMI1000

61.364

85.556

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.716

90

0.519