Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   WJM95_RS01250 Genome accession   NZ_CP149798
Coordinates   279062..279664 (+) Length   200 a.a.
NCBI ID   WP_339127564.1    Uniprot ID   -
Organism   Streptomyces sp. f51     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 274062..284664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM95_RS01230 (WJM95_01230) - 275135..276319 (+) 1185 WP_339127560.1 GAF domain-containing SpoIIE family protein phosphatase -
  WJM95_RS01235 (WJM95_01235) - 276350..276832 (-) 483 WP_339127561.1 VOC family protein -
  WJM95_RS01240 (WJM95_01240) - 277020..278258 (+) 1239 WP_339127562.1 epoxide hydrolase -
  WJM95_RS01245 (WJM95_01245) clpP 278407..279060 (+) 654 WP_339127563.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WJM95_RS01250 (WJM95_01250) clpP 279062..279664 (+) 603 WP_339127564.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WJM95_RS01255 (WJM95_01255) - 279695..280162 (-) 468 WP_339127565.1 helix-turn-helix transcriptional regulator -
  WJM95_RS01260 (WJM95_01260) - 280280..281629 (-) 1350 WP_339127566.1 DUF6777 domain-containing protein -
  WJM95_RS01265 (WJM95_01265) - 281794..283089 (+) 1296 WP_339127567.1 streptophobe family protein -
  WJM95_RS01270 (WJM95_01270) - 283105..284103 (-) 999 WP_339127568.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21789.78 Da        Isoelectric Point: 5.0497

>NTDB_id=875284 WJM95_RS01250 WP_339127564.1 279062..279664(+) (clpP) [Streptomyces sp. f51]
MGTYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGRQGTVSDLSLQAKEMLRIRAQVEEVLSRH
THHDVTTLRADMDRDKIFTAREAVEYGLADEILSRRLAVV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=875284 WJM95_RS01250 WP_339127564.1 279062..279664(+) (clpP) [Streptomyces sp. f51]
ATGGGTACGTACACGATTCCGAACGTCGTCGAGCGGACCCCGCAGGGCGAGCGGTCGTACGACGTCTTCAGCCGGCTCCT
GTCCGAGCGGATCATCTTCCTCGGCACGGAGATCGACGACGGCGTCGCCAACGTCGTCATCGCGCAACTCCTCCATCTGG
AGTCCTCGGCCCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGTGGATCGTTCACTTCGCTCATGGCCATCTAC
GACACGATGACCTTCGTCCAGGCGCCGATCTCGACGTTCTGCGTCGGACAGGCCGCCTCCACGGCCGCCGTGCTGCTGGC
CGGGGGCGATCCCGGGCGGCGGTTCGTCCTCGAGCACGCGCGCGTGCTGCTCGGCCAGCCGGCCAGCGGCGGCCGTCAAG
GGACGGTGTCGGACCTCAGCCTCCAGGCCAAGGAGATGCTGCGGATCCGCGCGCAGGTCGAGGAGGTCCTGTCGCGGCAC
ACCCACCACGACGTCACCACCCTGCGCGCGGACATGGACCGCGACAAGATCTTCACCGCGCGGGAGGCGGTGGAGTACGG
GCTCGCGGACGAGATCCTCAGCCGCCGGCTCGCCGTGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.206

94.5

0.465
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.789

95

0.435
  clpP Streptococcus mutans UA159

40.212

94.5

0.38
  clpP Streptococcus pneumoniae R6

39.583

96

0.38
  clpP Streptococcus pneumoniae TIGR4

39.583

96

0.38
  clpP Streptococcus pneumoniae Rx1

39.583

96

0.38
  clpP Streptococcus pneumoniae D39

39.583

96

0.38
  clpP Lactococcus lactis subsp. cremoris KW2

38.66

97

0.375
  clpP Streptococcus pyogenes JRS4

38.542

96

0.37
  clpP Streptococcus pyogenes MGAS315

38.542

96

0.37
  clpP Streptococcus thermophilus LMG 18311

38.021

96

0.365
  clpP Streptococcus thermophilus LMD-9

38.021

96

0.365