Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCV51_RS01370 Genome accession   NZ_CP133611
Coordinates   279977..281056 (+) Length   359 a.a.
NCBI ID   WP_013177198.1    Uniprot ID   -
Organism   Truepera radiovictrix strain CIP 108686     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 274977..286056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCV51_RS01355 (RCV51_01355) - 275758..276762 (+) 1005 WP_013177201.1 sugar phosphate isomerase/epimerase -
  RCV51_RS01360 (RCV51_01360) - 276899..278053 (+) 1155 WP_013177200.1 Gfo/Idh/MocA family protein -
  RCV51_RS01365 (RCV51_01365) - 278379..279815 (-) 1437 WP_013177199.1 PAS domain S-box protein -
  RCV51_RS01370 (RCV51_01370) recA 279977..281056 (+) 1080 WP_013177198.1 recombinase RecA Machinery gene
  RCV51_RS01375 (RCV51_01375) - 281061..281300 (+) 240 WP_013177197.1 hypothetical protein -
  RCV51_RS01380 (RCV51_01380) - 281297..281830 (-) 534 WP_013177196.1 DUF5872 domain-containing protein -
  RCV51_RS01385 (RCV51_01385) - 281882..283213 (-) 1332 WP_013177195.1 cell wall metabolism sensor histidine kinase WalK -
  RCV51_RS01390 (RCV51_01390) recO 283335..284108 (+) 774 WP_013177194.1 DNA repair protein RecO -
  RCV51_RS01395 (RCV51_01395) - 284118..284720 (+) 603 WP_013177193.1 glycerol-3-phosphate acyltransferase -
  RCV51_RS01400 (RCV51_01400) wecB 284758..285834 (-) 1077 WP_049773171.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38110.55 Da        Isoelectric Point: 6.5188

>NTDB_id=875284 RCV51_RS01370 WP_013177198.1 279977..281056(+) (recA) [Truepera radiovictrix strain CIP 108686]
MSQVDPQPDPQRTALDPARRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQGVIPTGSMSVDLALGVGGVPRGRIIEIYG
PESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGEQALEITELLVRSGAVDVVVVDSV
AALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALAKSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVR
RKGDVKSGADKVGNQVRVKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKEKAA
SYLLDNPHLIDALRQRVVAAVRGGAATPSLADAEPSAAQ

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=875284 RCV51_RS01370 WP_013177198.1 279977..281056(+) (recA) [Truepera radiovictrix strain CIP 108686]
ATGTCCCAAGTAGACCCGCAACCCGACCCTCAGCGCACCGCCCTCGACCCCGCACGGCGGCGGAGCCTGGAGAGCACGCT
GTCGCAGATCGAGAAGCAGTTCGGCAAGGGCGCCATCATGCGCCTCGGCGACGACCGCTCGCTACTCGACCAGGGCGTTA
TCCCCACCGGCTCGATGTCCGTCGACCTCGCCCTGGGCGTCGGCGGCGTCCCCAGAGGCCGCATCATCGAGATCTACGGC
CCCGAGTCCGGCGGCAAAACCACCCTCTCCTTGCACGTCATCGCCGAAGCCCAGCGCCTCGGCGGCGTCGCCGCCTTTGT
CGACGCCGAGCACGCGCTCGACCCCACCTACGCTAAAGCCCTGGGCGTCGACACCGACGAACTCCTCGTCTCCCAACCCG
ACACCGGCGAGCAAGCTCTAGAGATCACCGAGCTCCTGGTCCGCTCCGGCGCGGTCGACGTGGTGGTGGTCGACTCGGTC
GCCGCTTTGGTCCCCAGAGCCGAGATCGAGGGCGAGATGGGCGACGCCCACGTCGGTCTGCAAGCCCGGCTCATGAGCCA
AGCCCTGCGCAAGCTCACCGGCGCGCTCGCCAAAAGCCGCACCACCGCCATTTTCATCAACCAGATCCGCGAAAAGATCG
GCGTCATGTACGGCAACCCCGAGACCACCCCGGGGGGGCGGGCGCTCAAGTTCTACGCCTCGGTCCGTTTGGAGGTCCGC
CGCAAGGGCGACGTCAAGTCGGGCGCCGACAAGGTCGGCAACCAGGTGCGGGTCAAGGTGACCAAGAACAAGGTGGCCCC
GCCCTTTAAAGAAGCCGAGGTCGAGATCCTCTTCGGCAAAGGCATCGACAAGCTCGGCGACCTCATCACCATCGCCACCG
ACTTAGACCTCATCCAAAAGTCCGGCTCCTTTTACAAGTACGACGGCGTTACCATCGGTCAGGGCAAGGAAAAAGCCGCT
AGCTACCTCCTCGACAACCCCCACCTCATCGACGCCTTGCGCCAACGCGTCGTCGCCGCCGTCCGGGGGGGGGCGGCGAC
GCCCAGCCTCGCGGACGCGGAGCCGAGCGCCGCGCAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.584

91.086

0.616
  recA Pseudomonas stutzeri DSM 10701

62.356

96.936

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

64.89

88.858

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

90.251

0.571
  recA Streptococcus mitis NCTC 12261

62.539

89.972

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

89.972

0.56
  recA Streptococcus pyogenes NZ131

62.229

89.972

0.56
  recA Vibrio cholerae strain A1552

62.229

89.972

0.56
  recA Streptococcus mitis SK321

62.229

89.972

0.56
  recA Streptococcus pneumoniae D39

61.92

89.972

0.557
  recA Streptococcus pneumoniae Rx1

61.92

89.972

0.557
  recA Streptococcus pneumoniae R6

61.92

89.972

0.557
  recA Streptococcus pneumoniae TIGR4

61.92

89.972

0.557
  recA Acinetobacter baylyi ADP1

57.681

96.1

0.554
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.494

90.251

0.546
  recA Streptococcus mutans UA159

60.681

89.972

0.546
  recA Helicobacter pylori 26695

59.271

91.643

0.543
  recA Helicobacter pylori strain NCTC11637

59.271

91.643

0.543
  recA Acinetobacter baumannii D1279779

60.372

89.972

0.543
  recA Neisseria gonorrhoeae MS11

62.701

86.63

0.543
  recA Neisseria gonorrhoeae strain FA1090

62.701

86.63

0.543
  recA Neisseria gonorrhoeae MS11

62.701

86.63

0.543
  recA Glaesserella parasuis strain SC1401

60.815

88.858

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.282

90.808

0.529
  recA Ralstonia pseudosolanacearum GMI1000

61.364

85.794

0.526
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.627

92.479

0.524