Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RE628_RS16700 Genome accession   NZ_CP133605
Coordinates   3277352..3278413 (-) Length   353 a.a.
NCBI ID   WP_309154132.1    Uniprot ID   -
Organism   Paenibacillus sp. D2_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3272352..3283413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE628_RS16680 (RE628_16680) - 3273203..3273463 (-) 261 WP_006286829.1 stage V sporulation protein S -
  RE628_RS16685 (RE628_16685) - 3273594..3274388 (-) 795 WP_309159488.1 TIGR00282 family metallophosphoesterase -
  RE628_RS16690 (RE628_16690) rny 3274556..3276099 (-) 1544 Protein_3269 ribonuclease Y -
  RE628_RS16695 (RE628_16695) - 3276417..3277271 (-) 855 WP_309154131.1 RecX family transcriptional regulator -
  RE628_RS16700 (RE628_16700) recA 3277352..3278413 (-) 1062 WP_309154132.1 recombinase RecA Machinery gene
  RE628_RS16705 (RE628_16705) - 3279321..3280591 (-) 1271 Protein_3272 competence/damage-inducible protein A -
  RE628_RS16710 (RE628_16710) pgsA 3280717..3281304 (-) 588 WP_309154133.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RE628_RS16715 (RE628_16715) rimO 3281301..3282632 (-) 1332 WP_309159489.1 30S ribosomal protein S12 methylthiotransferase RimO -
  RE628_RS16720 (RE628_16720) - 3282791..3283282 (-) 492 WP_309154134.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38171.43 Da        Isoelectric Point: 4.9232

>NTDB_id=875270 RE628_RS16700 WP_309154132.1 3277352..3278413(-) (recA) [Paenibacillus sp. D2_2]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEIVPSGSIALDIALGTGGLPRGRIIEVYGPESSGKTTVALHAIAE
VQKIGGQAAFIDAEHALDPSYAGKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRVETIKMGNDMVGNRT
RIKVVKNKVAPPFKQAEIDIMYGEGISKEGSIIDIGVEQDIVDKSGAWYSFAGERLGQGRENAKQYLKEHPEISNTIEQK
IRENSNLTTTVAPSSASEQEDEAKEEQALFEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=875270 RE628_RS16700 WP_309154132.1 3277352..3278413(-) (recA) [Paenibacillus sp. D2_2]
TTGTCAGACCGCCGTGCTGCGCTGGAAATGGCGCTTCGTCAAATAGAAAAACAATTCGGAAAAGGTTCGATCATGAAGTT
GGGAGAATCCACACATATGCAGGTGGAAATCGTACCCAGCGGATCAATAGCATTGGATATCGCGCTTGGAACCGGGGGAT
TGCCTCGCGGAAGAATTATTGAAGTATACGGACCGGAATCTTCCGGTAAGACGACTGTAGCTTTGCATGCAATTGCGGAA
GTTCAGAAGATTGGTGGACAAGCTGCATTTATTGATGCGGAACATGCGCTTGATCCTTCCTATGCGGGCAAGCTTGGTGT
AAATATTGATGAATTACTGCTGTCCCAGCCGGATACAGGCGAGCAGGCGCTGGAAATCGCCGAAGCGCTTGTACGAAGCG
GAGCGGTAGACATTATCGTTATTGACTCAGTAGCAGCATTGGTACCTAAGGCTGAAATTGAGGGAGAAATGGGTGACTCC
CACGTCGGTTTGCAGGCTCGTCTGATGTCTCAGGCGCTTCGTAAATTATCGGGGGCAATCAGCAAATCCAAGACGATTGC
TATCTTCATTAACCAGCTTCGTGAGAAGGTAGGCGTTATGTTCGGTAATCCGGAGACGACTCCGGGTGGACGTGCACTTA
AGTTTTACTCGACAGTACGGCTAGATGTTCGCCGCGTAGAGACGATCAAGATGGGCAATGATATGGTCGGTAACCGGACT
CGTATCAAAGTCGTGAAGAATAAGGTAGCTCCGCCGTTCAAACAGGCTGAGATTGATATTATGTATGGTGAAGGGATCTC
CAAGGAAGGCAGCATTATCGATATTGGTGTAGAGCAGGATATCGTTGATAAGAGCGGCGCTTGGTATTCTTTCGCTGGCG
AGCGTCTTGGTCAGGGACGTGAGAATGCGAAGCAGTATTTGAAAGAACATCCGGAAATTTCGAATACAATCGAGCAAAAG
ATCCGTGAGAATAGCAATCTGACGACTACAGTTGCCCCATCGTCTGCAAGCGAGCAGGAAGATGAAGCTAAAGAAGAGCA
GGCACTTTTCGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.957

92.635

0.759
  recA Latilactobacillus sakei subsp. sakei 23K

74.375

90.652

0.674
  recA Streptococcus pneumoniae Rx1

65.546

100

0.663
  recA Streptococcus pneumoniae D39

65.546

100

0.663
  recA Streptococcus pneumoniae R6

65.546

100

0.663
  recA Streptococcus pneumoniae TIGR4

65.546

100

0.663
  recA Streptococcus mitis NCTC 12261

64.789

100

0.652
  recA Streptococcus mitis SK321

64.225

100

0.646
  recA Streptococcus mutans UA159

63.025

100

0.637
  recA Lactococcus lactis subsp. cremoris KW2

66.97

93.484

0.626
  recA Streptococcus pyogenes NZ131

68.21

91.785

0.626
  recA Neisseria gonorrhoeae MS11

63.188

97.734

0.618
  recA Neisseria gonorrhoeae MS11

63.188

97.734

0.618
  recA Neisseria gonorrhoeae strain FA1090

63.188

97.734

0.618
  recA Acinetobacter baylyi ADP1

61.364

99.717

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

90.935

0.606
  recA Vibrio cholerae strain A1552

66.667

90.935

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.244

92.918

0.606
  recA Acinetobacter baumannii D1279779

62.059

96.317

0.598
  recA Glaesserella parasuis strain SC1401

60.114

99.433

0.598
  recA Pseudomonas stutzeri DSM 10701

62.985

94.901

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.176

96.317

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.635

0.575
  recA Helicobacter pylori 26695

59.94

94.051

0.564
  recA Helicobacter pylori strain NCTC11637

59.94

94.051

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.491

91.218

0.561