Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q0W94_RS02575 Genome accession   NZ_AP024678
Coordinates   512563..513621 (+) Length   352 a.a.
NCBI ID   WP_297760696.1    Uniprot ID   A0A915V401
Organism   MAG: Thermosynechococcus sp. isolate KatS3mg067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 507563..518621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0W94_RS02560 (KatS3mg067_0502) - 510037..511194 (-) 1158 WP_297760686.1 DUF58 domain-containing protein -
  Q0W94_RS02565 (KatS3mg067_0503) - 511209..511667 (-) 459 WP_297760689.1 co-chaperone YbbN -
  Q0W94_RS02570 (KatS3mg067_0504) - 511688..512494 (+) 807 WP_297760692.1 hypothetical protein -
  Q0W94_RS02575 (KatS3mg067_0505) recA 512563..513621 (+) 1059 WP_297760696.1 recombinase RecA Machinery gene
  Q0W94_RS02580 (KatS3mg067_0506) - 513588..514127 (-) 540 WP_297760699.1 N-acetyltransferase -
  Q0W94_RS02585 (KatS3mg067_0507) - 514129..514998 (-) 870 WP_297760703.1 tetratricopeptide repeat protein -
  Q0W94_RS02590 (KatS3mg067_0508) - 515209..515481 (+) 273 WP_297760705.1 CD225/dispanin family protein -
  Q0W94_RS02595 (KatS3mg067_0509) nagA 515456..516598 (-) 1143 WP_297760708.1 N-acetylglucosamine-6-phosphate deacetylase -
  Q0W94_RS02600 (KatS3mg067_0510) - 516595..516822 (-) 228 WP_297762336.1 ferredoxin family protein -
  Q0W94_RS02605 (KatS3mg067_0511) - 516875..518506 (-) 1632 WP_297760712.1 helicase HerA domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37708.96 Da        Isoelectric Point: 5.9950

>NTDB_id=87481 Q0W94_RS02575 WP_297760696.1 512563..513621(+) (recA) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
MSNTILSPEKRKALEFAISQIEHNFGKGSIMRLGDAARMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAEVQKAGGVAAFVDAEHALDPTYSAALGVDIENLLVAQPDTGEAGLEIVDQLVRSTAVDIVVVDSVAALVPRAEIEG
DMGDSHVGLQARLMSQALRKITGNIGKTGCTVIFLNQLRQKIGVTYGNPETTTGGTALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGQGISKLGCILDMAEETGVITRKGAWYSYNGENLAQGRDNTIQYMEENPTFAQ
AVEQQVRQKLDQGAAGFANRVTHTHEDIGEGE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=87481 Q0W94_RS02575 WP_297760696.1 512563..513621(+) (recA) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
ATGAGTAACACCATCCTTTCCCCCGAAAAGCGCAAAGCCCTTGAGTTTGCCATCTCCCAAATCGAACACAACTTTGGTAA
GGGCAGCATTATGCGCCTTGGAGATGCCGCCCGCATGAAGGTGGAGACTATTTCCAGTGGCGCACTCACCCTGGACCTGG
CGTTGGGCGGCGGTCTACCCAAAGGACGCATCATTGAAATTTATGGGCCTGAAAGTTCAGGGAAAACCACCTTAGCCCTC
CACGCCGTAGCCGAAGTCCAGAAAGCCGGTGGAGTTGCTGCCTTTGTGGATGCCGAACATGCCCTGGATCCCACCTATTC
TGCTGCCCTAGGGGTGGATATTGAAAACCTGCTGGTGGCGCAGCCGGATACTGGAGAAGCGGGCTTAGAAATTGTTGATC
AACTGGTGCGCTCGACGGCTGTGGATATTGTGGTGGTGGACTCTGTTGCTGCCTTGGTGCCCCGTGCTGAAATTGAAGGG
GACATGGGAGATAGCCATGTGGGGCTGCAAGCCCGCCTCATGAGCCAAGCCCTGCGCAAAATTACCGGCAATATCGGTAA
AACGGGCTGTACGGTGATTTTCCTGAACCAATTGCGGCAAAAAATTGGCGTCACCTACGGTAACCCGGAAACGACAACGG
GGGGAACAGCCCTCAAGTTCTATGCCTCGGTGCGCCTAGATATTCGCCGGGTGCAAACCCTGAAGAAGGGAACAGAGGAA
TTTGGGATTCGCGCCAAAGTCAAGGTCGCCAAAAACAAGGTGGCGCCTCCCTTTCGCATTGCGGAGTTTGACATTATTTT
TGGCCAGGGGATTTCCAAGCTCGGCTGCATTCTCGATATGGCCGAGGAAACCGGTGTGATTACTCGCAAAGGGGCTTGGT
ATTCCTACAACGGCGAAAATCTTGCCCAAGGCCGCGACAACACAATTCAGTACATGGAGGAGAACCCCACCTTTGCCCAA
GCGGTTGAACAGCAGGTGCGGCAAAAGCTAGACCAAGGAGCAGCGGGCTTTGCCAATAGGGTGACTCATACCCATGAGGA
CATTGGCGAAGGGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.905

95.455

0.591
  recA Pseudomonas stutzeri DSM 10701

59.483

98.864

0.588
  recA Acinetobacter baumannii D1279779

62.27

92.614

0.577
  recA Neisseria gonorrhoeae MS11

62.346

92.045

0.574
  recA Neisseria gonorrhoeae strain FA1090

62.346

92.045

0.574
  recA Neisseria gonorrhoeae MS11

62.346

92.045

0.574
  recA Glaesserella parasuis strain SC1401

60.479

94.886

0.574
  recA Streptococcus pneumoniae Rx1

61.585

93.182

0.574
  recA Streptococcus pneumoniae D39

61.585

93.182

0.574
  recA Streptococcus pneumoniae R6

61.585

93.182

0.574
  recA Streptococcus pneumoniae TIGR4

61.585

93.182

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

62.229

91.761

0.571
  recA Streptococcus mitis NCTC 12261

61.846

92.33

0.571
  recA Streptococcus mitis SK321

61.846

92.33

0.571
  recA Ralstonia pseudosolanacearum GMI1000

61.28

93.182

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.061

98.58

0.563
  recA Helicobacter pylori strain NCTC11637

60.245

92.898

0.56
  recA Helicobacter pylori 26695

60.245

92.898

0.56
  recA Streptococcus pyogenes NZ131

60.245

92.898

0.56
  recA Streptococcus mutans UA159

60.615

92.33

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.878

93.466

0.56
  recA Lactococcus lactis subsp. cremoris KW2

58.951

92.045

0.543
  recA Vibrio cholerae strain A1552

58.589

92.614

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.589

92.614

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

90.909

0.534

Multiple sequence alignment