Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RDV58_RS00530 Genome accession   NZ_CP133475
Coordinates   100699..101850 (-) Length   383 a.a.
NCBI ID   WP_002262392.1    Uniprot ID   P27624
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95699..106850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS00490 (RDV58_00490) - 97082..97381 (-) 300 WP_002262384.1 DUF1292 domain-containing protein -
  RDV58_RS00495 (RDV58_00495) ruvX 97462..97881 (-) 420 WP_002262385.1 Holliday junction resolvase RuvX -
  RDV58_RS00500 (RDV58_00500) - 97878..98147 (-) 270 WP_002262386.1 IreB family regulatory phosphoprotein -
  RDV58_RS00505 (RDV58_00505) brsR 98315..98749 (+) 435 WP_002280017.1 bacteriocin genes transcriptional regulator BrsR Regulator
  RDV58_RS00510 (RDV58_00510) brsM 98762..99208 (+) 447 WP_002262388.1 bacteriocin genes regulator BrsM Regulator
  RDV58_RS00515 (RDV58_00515) - 99199..99399 (-) 201 Protein_95 hypothetical protein -
  RDV58_RS00520 (RDV58_00520) - 99540..99965 (-) 426 WP_002271571.1 hypothetical protein -
  RDV58_RS00525 (RDV58_00525) spx 100216..100614 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  RDV58_RS00530 (RDV58_00530) recA 100699..101850 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  RDV58_RS00535 (RDV58_00535) cinA 101890..103146 (-) 1257 WP_002280016.1 competence/damage-inducible protein A Machinery gene
  RDV58_RS00540 (RDV58_00540) - 103295..103855 (-) 561 WP_002266114.1 DNA-3-methyladenine glycosylase I -
  RDV58_RS00545 (RDV58_00545) ruvA 103937..104530 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA -
  RDV58_RS00550 (RDV58_00550) mutL 104712..106667 (-) 1956 WP_002280015.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41420.01 Da        Isoelectric Point: 4.9881

>NTDB_id=874558 RDV58_RS00530 WP_002262392.1 100699..101850(-) (recA) [Streptococcus mutans strain LMG 14558]
MAKRIKKTEEITKKFGDERKKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKIGQGSE
NAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTEEKQSSKEKETDEKADKNLVLELDDTIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=874558 RDV58_RS00530 WP_002262392.1 100699..101850(-) (recA) [Streptococcus mutans strain LMG 14558]
TTGGCCAAAAGAATAAAAAAGACAGAAGAAATAACGAAAAAATTTGGTGATGAGCGTAAGAAAGCTCTTGATGATGCTTT
GAAAAACATCGAAAAAGATTTTGGTAAAGGTGCAGTTATGCGTCTGGGTGAACGCGCTGAACAAAAGGTTCAGGTGATGA
GTTCAGGAAGTCTGGCTCTTGATATTGCTCTTGGGGCAGGCGGTTATCCAAAAGGGCGTATCGTTGAGATTTACGGGCCA
GAATCTTCTGGTAAGACAACTGTCGCTCTTCATGCTGTTGCTCAGGCGCAAAAAGATGGCGGTATTGCCGCTTTCATTGA
TGCAGAACATGCCCTTGATCCAGCCTATGCTGCTGCTCTTGGCGTTAATATTGATGAGCTTTTGCTTTCACAACCAGATT
CAGGAGAACAGGGTCTTGAAATTGCAGGGAAATTGATTGATTCTGGCGCTGTTGATTTAGTTGTTGTTGACTCAGTGGCA
GCTTTAGTACCACGTGCGGAGATTGACGGAGATATTGGTGATAGTCATGTTGGCTTACAAGCACGCATGATGAGTCAAGC
GATGCGTAAATTATCAGCTTCAATCAATAAAACAAAAACCATTGCCATTTTTATTAATCAATTGCGGGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGCGGGCGTGCCTTGAAGTTTTATTCTTCTGTGCGTCTTGATGTCCGTGGC
AATACTCAAATTAAAGGAACCGGGGAACAAAAAGACAGCAATATTGGTAAAGAGACCAAAATTAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTTAAGGAAGCTTTTGTAGAAATTATATATGGTGAAGGCATTTCTCGTACAGGTGAATTAGTTAAGA
TTGCCAGTGATTTGGGAATTATCCAAAAAGCTGGAGCTTGGTACTCTTATAATGGTGAAAAAATTGGGCAAGGTTCTGAA
AATGCTAAAAAATTCCTAGCTGATAATCCAGAAATTTTTGATGACATCGATCATAAAGTGCGTGTTCAATATGGTTTAAT
TGAGGAAGATAATACTGAAGAAAAACAGTCTTCTAAAGAAAAAGAAACTGATGAGAAAGCTGACAAAAACCTTGTTTTAG
AGCTGGATGATACAATTGAGCTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P27624

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

100

100

1
  recA Streptococcus pyogenes NZ131

87.206

100

0.872
  recA Streptococcus pneumoniae D39

83.204

100

0.841
  recA Streptococcus pneumoniae Rx1

83.204

100

0.841
  recA Streptococcus pneumoniae R6

83.204

100

0.841
  recA Streptococcus pneumoniae TIGR4

83.204

100

0.841
  recA Streptococcus mitis NCTC 12261

84.293

99.739

0.841
  recA Streptococcus mitis SK321

83.77

99.739

0.836
  recA Lactococcus lactis subsp. cremoris KW2

76.657

90.601

0.695
  recA Latilactobacillus sakei subsp. sakei 23K

68.208

90.339

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.901

0.587
  recA Neisseria gonorrhoeae MS11

60.684

91.645

0.556
  recA Neisseria gonorrhoeae MS11

60.684

91.645

0.556
  recA Neisseria gonorrhoeae strain FA1090

60.684

91.645

0.556
  recA Acinetobacter baylyi ADP1

59.375

91.906

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.411

89.034

0.538
  recA Glaesserella parasuis strain SC1401

60.294

88.773

0.535
  recA Acinetobacter baumannii D1279779

61.585

85.64

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

84.334

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Pseudomonas stutzeri DSM 10701

57.864

87.99

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.423

0.499
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.768

0.493
  recA Helicobacter pylori 26695

56.287

87.206

0.491
  recA Helicobacter pylori strain NCTC11637

56.287

87.206

0.491