Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RDJ12_RS06395 Genome accession   NZ_CP133437
Coordinates   1380956..1382044 (+) Length   362 a.a.
NCBI ID   WP_261920158.1    Uniprot ID   A0A8E3S992
Organism   Mergibacter septicus strain 19Y0039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1375956..1387044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ12_RS06365 (RDJ12_06365) clpP 1376469..1377065 (+) 597 WP_261920163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  RDJ12_RS06370 (RDJ12_06370) clpX 1377068..1378306 (+) 1239 WP_261920162.1 ATP-dependent protease ATP-binding subunit ClpX -
  RDJ12_RS06375 (RDJ12_06375) aroE 1378341..1379147 (-) 807 WP_261921039.1 shikimate dehydrogenase -
  RDJ12_RS06380 (RDJ12_06380) - 1379160..1379714 (-) 555 WP_261920161.1 Sua5/YciO/YrdC/YwlC family protein -
  RDJ12_RS06385 (RDJ12_06385) - 1379707..1380258 (-) 552 WP_261920160.1 type I DNA topoisomerase -
  RDJ12_RS06390 (RDJ12_06390) rraB 1380301..1380696 (-) 396 WP_261920159.1 ribonuclease E inhibitor RraB -
  RDJ12_RS06395 (RDJ12_06395) recA 1380956..1382044 (+) 1089 WP_261920158.1 recombinase RecA Machinery gene
  RDJ12_RS06400 (RDJ12_06400) infA 1382333..1382551 (+) 219 WP_005627617.1 translation initiation factor IF-1 -
  RDJ12_RS06405 (RDJ12_06405) lnt 1382626..1384188 (-) 1563 WP_261920157.1 apolipoprotein N-acyltransferase -
  RDJ12_RS06410 (RDJ12_06410) corC 1384255..1385163 (-) 909 WP_261921038.1 CNNM family magnesium/cobalt transport protein CorC -
  RDJ12_RS06415 (RDJ12_06415) - 1385295..1386602 (-) 1308 WP_261920156.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39341.90 Da        Isoelectric Point: 5.0792

>NTDB_id=874054 RDJ12_RS06395 WP_261920158.1 1380956..1382044(+) (recA) [Mergibacter septicus strain 19Y0039]
MKESKKENINSDDKQKALAAALGQIEKQFGKGSIMKLGDNRAMDVETISTGSLALDLALGAGGLPMGRIVEIFGPESSGK
TTLTLEVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVIDSVAALTPK
AEIEGDMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVK
NGEEVIGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELIDLGVKHKLIEKAGAWYSYQGEKIGQGKTNVSKFLTDH
PEKAQEIEKNLRELLLNPQTMDNIDFNITEEPSIESIEDENF

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=874054 RDJ12_RS06395 WP_261920158.1 1380956..1382044(+) (recA) [Mergibacter septicus strain 19Y0039]
ATGAAAGAATCAAAAAAAGAAAACATTAATTCAGATGACAAACAAAAAGCTTTAGCTGCGGCTCTTGGACAAATCGAAAA
ACAATTTGGTAAAGGCTCTATTATGAAACTCGGTGATAACCGAGCGATGGATGTAGAAACCATTTCAACGGGTTCATTAG
CATTAGACCTCGCCTTAGGCGCTGGTGGCTTACCTATGGGACGAATTGTAGAAATTTTTGGCCCTGAATCCTCTGGAAAA
ACAACCTTAACCTTAGAAGTTATTGCTTCAGCTCAACGTGAAGGGAAAACTTGCGCCTTTATTGATGCAGAACACGCCCT
TGATCCGATTTATGCAAAAAAATTAGGGGTAGATATAGATCAACTTTTAGTTTCTCAACCCGATACTGGTGAACAAGCAC
TCGAAATTGCTGATGCACTAGCTCGCTCTGGTGCTGTCGATATTTTAGTTATTGATTCTGTGGCGGCATTAACACCAAAA
GCTGAAATCGAAGGTGATATGGGCGATTCTCATATGGGGTTACAAGCGAGAATGTTATCGCAAGCAATGCGTAAACTAAC
AGGAAACCTAAAACAATCAAACTGTATGGCTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGTAACC
CCGAAACCACGACCGGTGGTAACGCTCTTAAATTCTATGCTTCAGTTCGTCTTGATATTCGCCGTACAGGTTCAGTTAAA
AATGGTGAAGAAGTAATAGGTAATGAAACTCGTATCAAGGTGGTAAAAAATAAAATAGCAGCTCCATTTAAACAAGCAGA
TACTCAAATTCTTTATGGACAAGGCTTTAATCGAAATGGTGAATTAATTGATTTAGGTGTAAAACATAAATTAATTGAAA
AAGCGGGTGCTTGGTATAGTTATCAAGGTGAAAAAATAGGACAAGGCAAAACCAATGTTTCTAAATTCTTAACAGATCAC
CCTGAAAAAGCACAGGAAATTGAGAAAAACTTACGAGAGTTACTACTTAATCCACAAACTATGGATAATATTGATTTTAA
TATTACTGAAGAACCAAGTATTGAATCAATTGAAGACGAAAACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.886

91.989

0.79
  recA Vibrio cholerae strain A1552

85.886

91.989

0.79
  recA Acinetobacter baylyi ADP1

70.588

93.923

0.663
  recA Acinetobacter baumannii D1279779

69.679

94.751

0.66
  recA Pseudomonas stutzeri DSM 10701

72.308

89.779

0.649
  recA Ralstonia pseudosolanacearum GMI1000

70.149

92.541

0.649
  recA Glaesserella parasuis strain SC1401

67.052

95.58

0.641
  recA Neisseria gonorrhoeae MS11

67.449

94.199

0.635
  recA Neisseria gonorrhoeae MS11

67.449

94.199

0.635
  recA Neisseria gonorrhoeae strain FA1090

67.449

94.199

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

91.436

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.733

88.95

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

88.674

0.558
  recA Streptococcus mutans UA159

61.538

89.779

0.552
  recA Streptococcus pneumoniae R6

61.42

89.503

0.55
  recA Streptococcus pneumoniae TIGR4

61.42

89.503

0.55
  recA Streptococcus pneumoniae Rx1

61.42

89.503

0.55
  recA Streptococcus pneumoniae D39

61.42

89.503

0.55
  recA Streptococcus pyogenes NZ131

60.923

89.779

0.547
  recA Streptococcus mitis SK321

61.111

89.503

0.547
  recA Streptococcus mitis NCTC 12261

61.111

89.503

0.547
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

88.674

0.547
  recA Helicobacter pylori 26695

60.991

89.227

0.544
  recA Helicobacter pylori strain NCTC11637

60.681

89.227

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

88.122

0.539
  recA Lactococcus lactis subsp. cremoris KW2

58.642

89.503

0.525