Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG17_RS22070 Genome accession   NZ_CP133268
Coordinates   4371660..4372697 (+) Length   345 a.a.
NCBI ID   WP_308172204.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4366660..4377697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS22050 (RCG17_22050) - 4367669..4368454 (+) 786 WP_308172201.1 DUF3388 domain-containing protein -
  RCG17_RS22055 (RCG17_22055) - 4368484..4369386 (+) 903 WP_308172202.1 RodZ domain-containing protein -
  RCG17_RS22060 (RCG17_22060) pgsA 4369443..4370021 (+) 579 WP_308172203.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG17_RS22065 (RCG17_22065) - 4370040..4371289 (+) 1250 Protein_4252 competence/damage-inducible protein A -
  RCG17_RS22070 (RCG17_22070) recA 4371660..4372697 (+) 1038 WP_308172204.1 recombinase RecA Machinery gene
  RCG17_RS22075 (RCG17_22075) rny 4372996..4374555 (+) 1560 WP_308172205.1 ribonuclease Y -
  RCG17_RS22080 (RCG17_22080) - 4374766..4375563 (+) 798 WP_308172206.1 TIGR00282 family metallophosphoesterase -
  RCG17_RS22085 (RCG17_22085) spoVS 4375742..4376002 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37574.90 Da        Isoelectric Point: 5.2184

>NTDB_id=873116 RCG17_RS22070 WP_308172204.1 4371660..4372697(+) (recA) [Neobacillus sp. PS3-12]
MSDRQAALEMALKQIEKQFGKGSIMKMGEKTETRISTVPSGSLALDAALGVGGYPRGRIIEIYGSESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPKYAHQLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNDERLGQGRENAKLFLKENPEIRLEIQKK
IREHYGLDAEKTVTESEDDQIELLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=873116 RCG17_RS22070 WP_308172204.1 4371660..4372697(+) (recA) [Neobacillus sp. PS3-12]
GTGAGTGATCGTCAAGCGGCCTTAGAAATGGCGCTAAAACAAATCGAAAAACAATTTGGTAAAGGCTCAATTATGAAGAT
GGGAGAGAAAACCGAAACAAGGATCTCCACTGTCCCAAGCGGATCATTAGCCCTTGATGCAGCACTTGGTGTAGGTGGAT
ATCCTAGGGGTAGGATCATTGAAATATACGGTTCGGAAAGCTCTGGTAAAACAACCGTCGCTTTGCACGCAATCGCTGAA
GTCCAAGCAAAAGGCGGTCAAGCAGCGTTTATCGATGCCGAACATGCGCTTGATCCAAAGTATGCCCATCAACTTGGTGT
TAATATTGATGAATTATTATTATCACAGCCTGACACCGGAGAACAAGCCCTTGAAATTGCTGAAGCCCTTGTTCGAAGCG
GTGCAGTAGACATTATAGTTATTGACTCTGTTGCTGCATTGGTTCCAAAGGCTGAGATTGAAGGAGAAATGGGAGATGCC
CATGTAGGTTTACAAGCACGTCTAATGTCACAAGCGCTTCGTAAACTATCAGGTGCCATCAATAAATCGAAAACAATTGC
TGTTTTCATTAACCAAATTCGTGAAAAGGTGGGTGTCATGTTCGGGAACCCCGAGACGACACCGGGTGGACGTGCACTCA
AGTTCTACTCAACAATACGTCTTGAAGTACGTCGTGCCGAAACATTAAAGCAAGGCAATGACATGGTTGGAAACAAAACC
AAAATTAAAGTTGTTAAAAACAAGGTTGCACCGCCATTTCGGGTTGCAGAAGTGGATATTATGTACGGTGAAGGAATATC
CAAAGAAGGCGAAATTATTGACCTTGGTTCAGAACTAGACATCGTTCAAAAGAGCGGTTCATGGTATTCCTATAATGATG
AACGATTAGGACAAGGAAGAGAAAATGCCAAATTGTTCTTAAAAGAAAATCCTGAAATCCGTTTGGAAATTCAAAAGAAA
ATCCGTGAGCACTACGGTTTAGATGCTGAAAAAACAGTTACTGAATCTGAAGACGATCAAATTGAGTTACTTGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.589

96.522

0.855
  recA Latilactobacillus sakei subsp. sakei 23K

74.709

99.71

0.745
  recA Streptococcus mitis NCTC 12261

65.805

100

0.664
  recA Streptococcus pneumoniae D39

67.059

98.551

0.661
  recA Streptococcus pneumoniae Rx1

67.059

98.551

0.661
  recA Streptococcus pneumoniae R6

67.059

98.551

0.661
  recA Streptococcus pneumoniae TIGR4

67.059

98.551

0.661
  recA Streptococcus mitis SK321

65.517

100

0.661
  recA Streptococcus mutans UA159

66.077

98.261

0.649
  recA Streptococcus pyogenes NZ131

67.073

95.072

0.638
  recA Lactococcus lactis subsp. cremoris KW2

66.061

95.652

0.632
  recA Ralstonia pseudosolanacearum GMI1000

66.667

93.913

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.343

98.841

0.626
  recA Neisseria gonorrhoeae MS11

63.343

98.841

0.626
  recA Neisseria gonorrhoeae MS11

63.343

98.841

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.343

98.841

0.626
  recA Helicobacter pylori 26695

62.614

95.362

0.597
  recA Helicobacter pylori strain NCTC11637

62.614

95.362

0.597
  recA Vibrio cholerae strain A1552

63.863

93.043

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

93.043

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.783

0.588
  recA Acinetobacter baylyi ADP1

58.841

100

0.588
  recA Pseudomonas stutzeri DSM 10701

63.125

92.754

0.586
  recA Glaesserella parasuis strain SC1401

63.009

92.464

0.583
  recA Acinetobacter baumannii D1279779

58.876

97.971

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.754

0.559