Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG23_RS03845 Genome accession   NZ_CP133267
Coordinates   769364..770407 (-) Length   347 a.a.
NCBI ID   WP_308178667.1    Uniprot ID   A0AA51Q9D4
Organism   Neobacillus sp. PS3-34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 764364..775407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG23_RS03825 (RCG23_03825) - 765020..765955 (-) 936 WP_308178665.1 dipeptidase -
  RCG23_RS03830 (RCG23_03830) - 766102..766362 (-) 261 WP_308178666.1 stage V sporulation protein S -
  RCG23_RS03835 (RCG23_03835) - 766561..767357 (-) 797 Protein_765 TIGR00282 family metallophosphoesterase -
  RCG23_RS03840 (RCG23_03840) rny 767488..769046 (-) 1559 Protein_766 ribonuclease Y -
  RCG23_RS03845 (RCG23_03845) recA 769364..770407 (-) 1044 WP_308178667.1 recombinase RecA Machinery gene
  RCG23_RS03850 (RCG23_03850) - 771312..772561 (-) 1250 Protein_768 competence/damage-inducible protein A -
  RCG23_RS03855 (RCG23_03855) pgsA 772623..773201 (-) 579 WP_308178668.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG23_RS03860 (RCG23_03860) - 773245..774141 (-) 897 WP_308178669.1 RodZ domain-containing protein -
  RCG23_RS03865 (RCG23_03865) - 774159..774950 (-) 792 WP_308178670.1 YmfK family protein -
  RCG23_RS03870 (RCG23_03870) - 775142..775399 (-) 258 WP_308178671.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37599.83 Da        Isoelectric Point: 4.9286

>NTDB_id=873042 RCG23_RS03845 WP_308178667.1 769364..770407(-) (recA) [Neobacillus sp. PS3-34]
MSDRQAALEMALKQIEKQFGKGSIMKLGEKIETRISTSPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEALKQGNDIVGNKT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETIDLGSDLDIVQKSGSWYSYNEERLGQGRENAKVFLKENPEIRLEIAKK
IREHYGLDGEKVVTEEAEDPDQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=873042 RCG23_RS03845 WP_308178667.1 769364..770407(-) (recA) [Neobacillus sp. PS3-34]
GTGAGTGATCGTCAGGCTGCCTTAGAAATGGCGTTAAAGCAAATAGAAAAACAATTTGGTAAAGGCTCTATCATGAAGCT
CGGTGAAAAGATTGAAACAAGAATTTCCACAAGTCCAAGTGGTTCCCTTGCTTTGGATGCCGCTTTAGGTGTTGGCGGAT
ACCCAAGAGGCCGTATTATTGAAATTTATGGACCTGAAAGCTCTGGTAAAACAACAGTTGCCCTTCATGCCATTGCAGAA
GTGCAGGCAAATGGCGGACAGGCTGCATTCATTGATGCCGAGCACGCTCTTGACCCGGCTTATGCCCAAAAGCTTGGCGT
AAACATTGATGAGCTTCTATTATCCCAGCCGGATACTGGTGAACAGGCACTTGAAATAGCTGAAGCGCTAGTTCGAAGCG
GTGCTGTAGATATTCTTGTAATTGACTCTGTTGCTGCTCTAGTTCCAAAAGCGGAAATCGAAGGCGAAATGGGAGATGCA
CATGTTGGCTTACAGGCCCGTTTAATGTCTCAGGCACTTCGGAAATTATCCGGTGCAATCAATAAGTCTAAAACAATTGC
AATCTTCATTAACCAGATTCGTGAAAAGGTAGGGGTTATGTTTGGTAACCCTGAAACAACCCCTGGTGGCCGTGCATTAA
AATTCTATTCTACTGTACGTCTTGAAGTGCGCCGTGCTGAAGCATTGAAGCAAGGCAATGATATCGTGGGGAATAAGACA
AAAATTAAAATTGTGAAAAATAAGGTTGCTCCTCCGTTCCGTACGGCAGAAGTGGACATTATGTATGGTGAAGGTATTTC
CAAAGAGGGCGAAACCATTGACCTTGGATCCGATTTGGATATCGTTCAAAAGAGCGGTTCTTGGTATTCATACAATGAAG
AGCGTCTTGGACAAGGCCGTGAAAATGCAAAAGTGTTCCTGAAAGAAAACCCTGAGATTCGCTTGGAAATTGCCAAGAAA
ATCCGTGAGCACTATGGGTTGGATGGGGAAAAAGTTGTTACAGAGGAAGCTGAAGATCCGGACCAGTTCGAATTGATCGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.489

95.965

0.859
  recA Latilactobacillus sakei subsp. sakei 23K

75.692

93.66

0.709
  recA Streptococcus pneumoniae Rx1

68.513

98.847

0.677
  recA Streptococcus pneumoniae D39

68.513

98.847

0.677
  recA Streptococcus pneumoniae R6

68.513

98.847

0.677
  recA Streptococcus pneumoniae TIGR4

68.513

98.847

0.677
  recA Streptococcus mitis NCTC 12261

66.382

100

0.671
  recA Streptococcus mitis SK321

66.097

100

0.669
  recA Streptococcus mutans UA159

68.997

94.813

0.654
  recA Streptococcus pyogenes NZ131

68.293

94.524

0.646
  recA Neisseria gonorrhoeae MS11

64.497

97.406

0.628
  recA Neisseria gonorrhoeae MS11

64.497

97.406

0.628
  recA Neisseria gonorrhoeae strain FA1090

64.497

97.406

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.758

95.101

0.625
  recA Ralstonia pseudosolanacearum GMI1000

65.749

94.236

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.024

94.524

0.605
  recA Vibrio cholerae strain A1552

65.109

92.507

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.507

0.602
  recA Helicobacter pylori strain NCTC11637

64

93.66

0.599
  recA Helicobacter pylori 26695

63.692

93.66

0.597
  recA Acinetobacter baylyi ADP1

59.42

99.424

0.591
  recA Acinetobacter baumannii D1279779

60.117

98.271

0.591
  recA Glaesserella parasuis strain SC1401

60.355

97.406

0.588
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.236

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.219

0.565