Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG19_RS18320 Genome accession   NZ_CP133265
Coordinates   3676815..3677855 (+) Length   346 a.a.
NCBI ID   WP_166238098.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3671815..3682855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG19_RS18295 (RCG19_18295) - 3672481..3672738 (+) 258 WP_007087162.1 DUF3243 domain-containing protein -
  RCG19_RS18300 (RCG19_18300) - 3672907..3673698 (+) 792 WP_166238148.1 DUF3388 domain-containing protein -
  RCG19_RS18305 (RCG19_18305) - 3673719..3674618 (+) 900 WP_374049555.1 helix-turn-helix domain-containing protein -
  RCG19_RS18310 (RCG19_18310) pgsA 3674670..3675254 (+) 585 WP_308108265.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG19_RS18315 (RCG19_18315) cinA 3675285..3676541 (+) 1257 WP_308108267.1 competence/damage-inducible protein A Machinery gene
  RCG19_RS18320 (RCG19_18320) recA 3676815..3677855 (+) 1041 WP_166238098.1 recombinase RecA Machinery gene
  RCG19_RS18325 (RCG19_18325) rny 3678173..3679732 (+) 1560 WP_166238100.1 ribonuclease Y -
  RCG19_RS18330 (RCG19_18330) - 3679823..3680620 (+) 798 WP_308108268.1 TIGR00282 family metallophosphoesterase -
  RCG19_RS18335 (RCG19_18335) spoVS 3680821..3681081 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37536.76 Da        Isoelectric Point: 5.0067

>NTDB_id=872993 RCG19_RS18320 WP_166238098.1 3676815..3677855(+) (recA) [Neobacillus sp. OS1-2]
MSDRKAALEMALKQIEKQFGKGSVMKMGEKTDTKILTSPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRIEVRRAEALKQGTDIVGNKT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETIDLGSELDIVEKSGSWYSYNGERLGQGRENAKLFLRENPDIRLEISGK
IREHYGLDSEKFVTEKDDDEQFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=872993 RCG19_RS18320 WP_166238098.1 3676815..3677855(+) (recA) [Neobacillus sp. OS1-2]
GTGAGTGATCGTAAAGCGGCCTTAGAAATGGCGTTAAAGCAAATAGAAAAGCAATTCGGTAAAGGTTCCGTCATGAAGAT
GGGAGAGAAAACAGATACCAAGATATTAACGAGTCCGAGTGGCTCATTAGCACTTGATGCAGCACTTGGGGTGGGCGGAT
ATCCTAGAGGCAGAATTATCGAGGTTTATGGTCCTGAGAGTTCTGGTAAAACAACAGTTGCCTTGCATGCGATAGCTGAA
GTCCAAGCGAATGGGGGACAAGCAGCATTTATCGATGCTGAGCATGCCCTTGACCCGGCATATGCCCAAAAATTAGGTGT
AAACATTGATGAATTATTGCTATCACAGCCTGATACCGGTGAACAGGCACTTGAAATCGCTGAAGCATTAGTTCGAAGTG
GCGCAATTGATATTATTGTAGTCGACTCAGTAGCAGCCTTAGTTCCAAAAGCGGAAATTGAAGGCGAAATGGGAGATTCT
CACATGGGCTTACAAGCTCGTTTGATGTCGCAAGCACTGCGTAAATTATCTGGTGCAATCAACAAATCGAAGACCATTGC
CATATTCATTAACCAAGTTCGTGAAAAAATTGGCGTTATGTTTGGAAACCCTGAGACAACTCCAGGTGGACGCGCATTAA
AATTCTATTCAACTGTCCGTATTGAAGTACGCCGTGCAGAGGCGTTAAAACAGGGCACTGATATTGTGGGTAATAAGACG
AAGATTAAAATAGTTAAGAATAAAGTCGCTCCTCCTTTCCGTACTGCAGAGGTAGATATTATGTATGGTGAGGGAATTTC
TAAAGAAGGCGAGACCATTGATCTCGGCTCAGAGTTAGATATTGTTGAAAAGAGCGGGTCATGGTACTCCTACAATGGTG
AAAGATTAGGCCAAGGCCGCGAGAATGCAAAGCTTTTCTTAAGGGAAAACCCAGATATTCGTCTCGAAATTTCAGGGAAA
ATCCGTGAGCATTATGGTTTAGATAGTGAAAAATTTGTCACTGAGAAAGACGATGATGAACAATTTGAATTAATAGACTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.087

96.243

0.838
  recA Latilactobacillus sakei subsp. sakei 23K

71.182

100

0.714
  recA Streptococcus mutans UA159

65.797

99.711

0.656
  recA Streptococcus mitis NCTC 12261

65.889

99.133

0.653
  recA Streptococcus mitis SK321

65.598

99.133

0.65
  recA Streptococcus pneumoniae R6

66.176

98.266

0.65
  recA Streptococcus pneumoniae Rx1

66.176

98.266

0.65
  recA Streptococcus pneumoniae D39

66.176

98.266

0.65
  recA Streptococcus pneumoniae TIGR4

66.176

98.266

0.65
  recA Streptococcus pyogenes NZ131

67.073

94.798

0.636
  recA Neisseria gonorrhoeae MS11

64.035

98.844

0.633
  recA Neisseria gonorrhoeae MS11

64.035

98.844

0.633
  recA Neisseria gonorrhoeae strain FA1090

64.035

98.844

0.633
  recA Lactococcus lactis subsp. cremoris KW2

64.179

96.821

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.138

94.509

0.616
  recA Helicobacter pylori strain NCTC11637

63.222

95.087

0.601
  recA Helicobacter pylori 26695

62.918

95.087

0.598
  recA Acinetobacter baylyi ADP1

63.385

93.931

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.767

97.977

0.595
  recA Acinetobacter baumannii D1279779

60.058

99.133

0.595
  recA Vibrio cholerae strain A1552

64.174

92.775

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.775

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Glaesserella parasuis strain SC1401

62.696

92.197

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.486

0.561