Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG18_RS28190 Genome accession   NZ_CP133264
Coordinates   5732230..5733294 (-) Length   354 a.a.
NCBI ID   WP_308039287.1    Uniprot ID   -
Organism   Clostridium sp. OS1-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5727230..5738294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG18_RS28165 (RCG18_28165) - 5727278..5727634 (-) 357 WP_308039282.1 EamA family transporter -
  RCG18_RS28170 (RCG18_28170) - 5727631..5728884 (-) 1254 WP_308039283.1 hypothetical protein -
  RCG18_RS28175 (RCG18_28175) - 5728902..5729767 (-) 866 Protein_5504 decaprenyl-phosphate phosphoribosyltransferase -
  RCG18_RS28180 (RCG18_28180) - 5729967..5730227 (-) 261 WP_066620210.1 stage V sporulation protein S -
  RCG18_RS28185 (RCG18_28185) rny 5730372..5731913 (-) 1542 WP_308039285.1 ribonuclease Y -
  RCG18_RS28190 (RCG18_28190) recA 5732230..5733294 (-) 1065 WP_308039287.1 recombinase RecA Machinery gene
  RCG18_RS28195 (RCG18_28195) pgsA 5733542..5734129 (-) 588 WP_308039288.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG18_RS28200 (RCG18_28200) rimO 5734113..5735429 (-) 1317 WP_308042129.1 30S ribosomal protein S12 methylthiotransferase RimO -
  RCG18_RS28205 (RCG18_28205) - 5735631..5737886 (-) 2256 WP_308039290.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38382.87 Da        Isoelectric Point: 5.5703

>NTDB_id=872943 RCG18_RS28190 WP_308039287.1 5732230..5733294(-) (recA) [Clostridium sp. OS1-26]
MGNINTDKLKALEAAMGQIEKQFGKGSIMKLGEHSILNVDAVSTGCLDLDISLGIGGVPRGRVVEIFGPESSGKTTVALH
IVAEAQKSGGTAAFIDAEHALDPAYAKNLGVDIENLIVSQPDTGEQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGE
MGDSHVGLQARLMSQALRKLTGSINKSKCVTIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRRIDSIKQGDDIV
GNRTKVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFSYKETRLGQGRENAKQFLKENPEILLE
IENKIREKYELPLAKALNANKVDSEQPKETVENE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=872943 RCG18_RS28190 WP_308039287.1 5732230..5733294(-) (recA) [Clostridium sp. OS1-26]
ATGGGGAATATTAATACTGATAAACTAAAAGCTTTAGAAGCAGCTATGGGGCAGATAGAAAAACAATTTGGAAAAGGTTC
TATAATGAAGCTTGGAGAGCACAGTATACTAAATGTTGATGCTGTTTCTACAGGATGCCTTGATCTTGATATATCTTTAG
GCATTGGTGGAGTACCTAGAGGAAGAGTTGTTGAAATATTTGGGCCTGAGTCTTCAGGTAAAACTACTGTAGCACTTCAT
ATAGTGGCTGAAGCACAAAAATCAGGTGGAACAGCAGCATTTATTGATGCAGAGCATGCACTTGATCCTGCATATGCCAA
AAATTTAGGAGTAGATATAGAGAACTTAATTGTATCACAACCAGATACTGGAGAACAGGCTCTAGAAATAGCAGAAGCTT
TAGTAAGATCTGGGGCAGTAGATGTAATTGTTGTAGACTCTGTAGCTGCTTTAGTTCCTAAGGCAGAAATAGAAGGAGAA
ATGGGTGACTCTCATGTAGGACTACAAGCTAGACTTATGTCTCAAGCTTTAAGAAAACTTACAGGTTCTATAAACAAGTC
AAAATGTGTAACTATATTTATCAACCAGTTAAGAGAAAAGGTTGGTGTTATGTTCGGAAATCCTGAAACGACTCCGGGTG
GTAGGGCATTAAAGTTCTATGCATCAGTGAGAATGGATGTTAGAAGAATAGATTCAATTAAACAGGGCGATGATATTGTA
GGTAATAGAACAAAGGTTAAGGTAACAAAGAATAAGGTTGCGCCACCTTTCAAACAAGCTGAGTTTGATATTATGTACAA
TCAAGGTATATCAAGAGAAGGTAATGTTCTAGATGTAGGGGTAAGGGAGGAACTAGTACAAAAAAGTGGTGCTTGGTTCT
CTTATAAAGAAACTAGGTTAGGACAAGGAAGAGAAAATGCAAAGCAATTCTTGAAGGAAAACCCTGAGATCTTACTTGAA
ATTGAGAATAAAATTAGAGAAAAATACGAATTGCCTTTAGCTAAGGCTTTAAATGCTAATAAAGTAGATAGTGAACAACC
AAAAGAAACTGTTGAAAATGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72.393

92.09

0.667
  recA Ralstonia pseudosolanacearum GMI1000

67.073

92.655

0.621
  recA Streptococcus pneumoniae TIGR4

62.04

99.718

0.619
  recA Streptococcus pneumoniae R6

62.04

99.718

0.619
  recA Streptococcus pneumoniae D39

62.04

99.718

0.619
  recA Streptococcus pneumoniae Rx1

62.04

99.718

0.619
  recA Streptococcus mitis NCTC 12261

62.178

98.588

0.613
  recA Neisseria gonorrhoeae MS11

62.178

98.588

0.613
  recA Neisseria gonorrhoeae MS11

62.178

98.588

0.613
  recA Neisseria gonorrhoeae strain FA1090

62.178

98.588

0.613
  recA Glaesserella parasuis strain SC1401

64.392

95.198

0.613
  recA Streptococcus mitis SK321

61.891

98.588

0.61
  recA Streptococcus mutans UA159

61.714

98.87

0.61
  recA Acinetobacter baylyi ADP1

62.5

97.175

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.358

91.525

0.607
  recA Vibrio cholerae strain A1552

66.358

91.525

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

67.085

90.113

0.605
  recA Pseudomonas stutzeri DSM 10701

65.538

91.808

0.602
  recA Acinetobacter baumannii D1279779

65.231

91.808

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

93.785

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.815

91.525

0.593
  recA Streptococcus pyogenes NZ131

63.914

92.373

0.59
  recA Lactococcus lactis subsp. cremoris KW2

63.804

92.09

0.588
  recA Helicobacter pylori strain NCTC11637

64

91.808

0.588
  recA Helicobacter pylori 26695

64

91.808

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

90.395

0.551