Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   RCG24_RS08035 Genome accession   NZ_CP133263
Coordinates   1585910..1586107 (-) Length   65 a.a.
NCBI ID   WP_374049136.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1580910..1591107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG24_RS08020 (RCG24_08020) - 1581702..1582118 (-) 417 Protein_1561 DNA recombination/repair protein RecA -
  RCG24_RS08025 (RCG24_08025) - 1582209..1584341 (-) 2133 WP_202653962.1 reverse transcriptase/maturase family protein -
  RCG24_RS08030 (RCG24_08030) - 1585066..1585518 (-) 453 Protein_1563 DNA recombination/repair protein RecA -
  RCG24_RS08035 (RCG24_08035) recA 1585910..1586107 (-) 198 WP_374049136.1 hypothetical protein Machinery gene
  RCG24_RS08040 (RCG24_08040) - 1586359..1587610 (-) 1252 Protein_1565 competence/damage-inducible protein A -
  RCG24_RS08045 (RCG24_08045) pgsA 1587637..1588221 (-) 585 WP_202653960.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG24_RS08050 (RCG24_08050) - 1588305..1589204 (-) 900 WP_202653959.1 helix-turn-helix domain-containing protein -
  RCG24_RS08055 (RCG24_08055) - 1589226..1590014 (-) 789 WP_202653958.1 DUF3388 domain-containing protein -
  RCG24_RS08060 (RCG24_08060) - 1590160..1590405 (-) 246 WP_202653957.1 DUF3243 domain-containing protein -

Sequence


Protein


Download         Length: 65 a.a.        Molecular weight: 6945.10 Da        Isoelectric Point: 9.6584

>NTDB_id=872892 RCG24_RS08035 WP_374049136.1 1585910..1586107(-) (recA) [Neobacillus sp. OS1-32]
MSDRKAALEMALKQIEKQFGKGSIMKMGEKTDTKISTVPSGSLALDAALGVGGYPRGRIIEIYGE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=872892 RCG24_RS08035 WP_374049136.1 1585910..1586107(-) (recA) [Neobacillus sp. OS1-32]
GTGAGTGACCGTAAGGCCGCGTTAGAAATGGCGCTAAAACAAATAGAAAAACAATTCGGTAAAGGTTCCATTATGAAAAT
GGGAGAAAAGACGGATACAAAAATTTCAACCGTACCAAGCGGCTCCCTGGCACTTGACGCAGCACTCGGAGTCGGGGGAT
ATCCTCGGGGAAGAATAATTGAAATTTATGGTGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.062

98.462

0.877

  recA Latilactobacillus sakei subsp. sakei 23K

79.032

95.385

0.754

  recA Streptococcus pneumoniae R6

65.079

96.923

0.631

  recA Streptococcus pneumoniae TIGR4

65.079

96.923

0.631

  recA Streptococcus mitis NCTC 12261

65.079

96.923

0.631

  recA Streptococcus mitis SK321

65.079

96.923

0.631

  recA Streptococcus pneumoniae Rx1

65.079

96.923

0.631

  recA Streptococcus pneumoniae D39

65.079

96.923

0.631

  recA Glaesserella parasuis strain SC1401

65.574

93.846

0.615

  recA Neisseria gonorrhoeae strain FA1090

60.606

100

0.615

  recA Lactococcus lactis subsp. cremoris KW2

63.492

96.923

0.615

  recA Neisseria gonorrhoeae MS11

60.606

100

0.615

  recA Neisseria gonorrhoeae MS11

60.606

100

0.615

  recA Streptococcus mutans UA159

61.905

96.923

0.6

  recA Streptococcus pyogenes NZ131

61.905

96.923

0.6

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.29

95.385

0.585

  recA Acinetobacter baylyi ADP1

56.923

100

0.569

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.73

96.923

0.569

  recA Pseudomonas stutzeri DSM 10701

58.065

95.385

0.554

  recA Vibrio cholerae strain A1552

56.452

95.385

0.538

  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.452

95.385

0.538

  recA Acinetobacter baumannii D1279779

56.452

95.385

0.538

  recA Helicobacter pylori strain NCTC11637

54.839

95.385

0.523

  recA Helicobacter pylori 26695

54.839

95.385

0.523

  recA Ralstonia pseudosolanacearum GMI1000

68

76.923

0.523

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

96.923

0.477