Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCG22_RS07455 Genome accession   NZ_CP133262
Coordinates   1561599..1562642 (-) Length   347 a.a.
NCBI ID   WP_098261214.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1556599..1567642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS07440 (RCG22_07440) spoVS 1558403..1558663 (-) 261 WP_026566505.1 stage V sporulation protein SpoVS -
  RCG22_RS07445 (RCG22_07445) - 1558872..1559669 (-) 798 WP_308106398.1 TIGR00282 family metallophosphoesterase -
  RCG22_RS07450 (RCG22_07450) rny 1559779..1561329 (-) 1551 WP_176525523.1 ribonuclease Y -
  RCG22_RS07455 (RCG22_07455) recA 1561599..1562642 (-) 1044 WP_098261214.1 recombinase RecA Machinery gene
  RCG22_RS07460 (RCG22_07460) cinA 1562912..1564165 (-) 1254 WP_308106399.1 competence/damage-inducible protein A Machinery gene
  RCG22_RS07465 (RCG22_07465) pgsA 1564202..1564786 (-) 585 WP_098261212.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCG22_RS07470 (RCG22_07470) - 1564838..1565737 (-) 900 WP_308106400.1 RodZ domain-containing protein -
  RCG22_RS07475 (RCG22_07475) - 1565759..1566550 (-) 792 WP_098261566.1 DUF3388 domain-containing protein -
  RCG22_RS07480 (RCG22_07480) - 1566717..1566974 (-) 258 WP_308106401.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37631.90 Da        Isoelectric Point: 5.0032

>NTDB_id=872828 RCG22_RS07455 WP_098261214.1 1561599..1562642(-) (recA) [Neobacillus sp. OS1-33]
MSNDRKAALEMALKQIEKQFGKGSVMKMGEKTDTKILTSPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQANGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGD
SHMGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRIEVRRAEALKQGTDIVGNK
TKIKIVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGSDLDIVEKSGSWYSYNGERLGQGRENAKLFLKENPDIRLEIQG
KIREHYGLDGEKFVTEKDDDEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=872828 RCG22_RS07455 WP_098261214.1 1561599..1562642(-) (recA) [Neobacillus sp. OS1-33]
GTGAGTAATGATCGTAAAGCGGCCTTAGAAATGGCGTTAAAGCAAATAGAAAAGCAGTTTGGTAAAGGTTCCGTCATGAA
GATGGGAGAGAAAACAGATACGAAGATTTTAACGAGTCCAAGTGGCTCTTTAGCGCTTGATGCAGCACTTGGAGTGGGTG
GATATCCTAGGGGCCGTATTATTGAAGTTTATGGCCCTGAGAGCTCTGGTAAAACAACAGTTGCTCTGCATGCAATCGCT
GAAGTTCAAGCAAATGGTGGACAAGCAGCATTCATTGATGCTGAACATGCCCTTGACCCGGCGTATGCCCAAAAATTAGG
TGTTAACATTGATGAGTTATTGCTATCACAGCCTGATACGGGTGAACAAGCACTTGAAATTGCAGAAGCATTAGTCCGAA
GTGGTGCAATTGATATTATTGTAGTCGACTCAGTAGCAGCCTTAGTTCCAAAAGCGGAAATTGAAGGCGAAATGGGAGAT
TCTCACATGGGCTTACAAGCTCGTTTGATGTCACAAGCACTGCGTAAATTATCTGGTGCCATCAACAAATCGAAGACCAT
TGCTATCTTTATAAACCAAGTTCGTGAAAAAATTGGTGTTATGTTTGGAAACCCCGAGACAACACCAGGTGGACGCGCGT
TAAAATTCTATTCCACTGTCCGTATTGAAGTACGACGTGCAGAGGCGTTAAAACAGGGAACTGATATCGTAGGTAATAAG
ACGAAGATAAAAATAGTTAAGAATAAAGTTGCTCCTCCTTTCCGAACTGCAGAGGTAGATATCATGTATGGTGAAGGAAT
TTCTAAAGAAGGTGAGATCATTGATCTTGGCTCAGATTTAGATATCGTTGAAAAGAGCGGATCATGGTACTCCTATAATG
GTGAAAGATTAGGTCAGGGCCGTGAAAATGCAAAGTTATTCTTGAAAGAAAATCCAGATATTCGCCTCGAAATTCAAGGG
AAAATCCGTGAACATTATGGTTTAGATGGTGAAAAATTTGTCACTGAGAAAGATGACGATGAACAATTTGAATTAATAGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.349

95.677

0.836
  recA Latilactobacillus sakei subsp. sakei 23K

70.69

100

0.709
  recA Streptococcus pneumoniae D39

67.353

97.983

0.66
  recA Streptococcus pneumoniae TIGR4

67.353

97.983

0.66
  recA Streptococcus pneumoniae R6

67.353

97.983

0.66
  recA Streptococcus pneumoniae Rx1

67.353

97.983

0.66
  recA Streptococcus mitis NCTC 12261

66.667

98.559

0.657
  recA Streptococcus mutans UA159

65.896

99.712

0.657
  recA Streptococcus mitis SK321

66.374

98.559

0.654
  recA Streptococcus pyogenes NZ131

67.173

94.813

0.637
  recA Neisseria gonorrhoeae MS11

64.035

98.559

0.631
  recA Neisseria gonorrhoeae MS11

64.035

98.559

0.631
  recA Neisseria gonorrhoeae strain FA1090

64.035

98.559

0.631
  recA Ralstonia pseudosolanacearum GMI1000

64.035

98.559

0.631
  recA Lactococcus lactis subsp. cremoris KW2

64.438

94.813

0.611
  recA Helicobacter pylori strain NCTC11637

63.253

95.677

0.605
  recA Helicobacter pylori 26695

62.952

95.677

0.602
  recA Vibrio cholerae strain A1552

64.198

93.372

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.198

93.372

0.599
  recA Acinetobacter baumannii D1279779

60.116

99.712

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.819

98.559

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

94.813

0.599
  recA Pseudomonas stutzeri DSM 10701

63.777

93.084

0.594
  recA Acinetobacter baylyi ADP1

62.769

93.66

0.588
  recA Glaesserella parasuis strain SC1401

63.009

91.931

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.559

92.795

0.562