Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCF72_RS06700 Genome accession   NZ_CP133242
Coordinates   1373292..1374335 (-) Length   347 a.a.
NCBI ID   WP_037573405.1    Uniprot ID   A0AAE5T2N1
Organism   Staphylococcus chromogenes strain BTM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1368292..1379335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF72_RS06685 (RCF72_06650) - 1370312..1370698 (-) 387 WP_037573409.1 ArsR/SmtB family transcription factor -
  RCF72_RS06690 (RCF72_06655) - 1370900..1371118 (+) 219 WP_037573959.1 hypothetical protein -
  RCF72_RS06695 (RCF72_06660) rny 1371190..1372749 (-) 1560 WP_105967277.1 ribonuclease Y -
  RCF72_RS06700 (RCF72_06665) recA 1373292..1374335 (-) 1044 WP_037573405.1 recombinase RecA Machinery gene
  RCF72_RS06705 (RCF72_06670) - 1374498..1375649 (-) 1152 WP_037573400.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RCF72_RS06710 (RCF72_06675) pgsA 1375756..1376340 (-) 585 WP_037573398.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCF72_RS06715 (RCF72_06680) - 1376381..1376776 (-) 396 WP_037573396.1 helix-turn-helix domain-containing protein -
  RCF72_RS06720 (RCF72_06685) - 1376789..1377658 (-) 870 WP_037573391.1 DUF3388 domain-containing protein -
  RCF72_RS06725 (RCF72_06690) ymfI 1377710..1378414 (-) 705 WP_037573389.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37850.81 Da        Isoelectric Point: 4.9243

>NTDB_id=872723 RCF72_RS06700 WP_037573405.1 1373292..1374335(-) (recA) [Staphylococcus chromogenes strain BTM]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISREGELIDLGVEYDIVDKSGAWYSYNGERMGQGKENVKMFLKEHPELEDEIDR
KLREKLGIFDGDVDENEADSPQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=872723 RCF72_RS06700 WP_037573405.1 1373292..1374335(-) (recA) [Staphylococcus chromogenes strain BTM]
TTGGATAATGAACGTCAAAAAGCACTCGATACAGTAATTAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTAATGAA
ACTTGGAGAAAATAAAGATCGCCGTGTTTCAAGTGTTTCAAGTGGCTCAGTTACTTTGGACCATGCACTTGGAGTAGGTG
GTTATCCTAAAGGTCGTATTATAGAAGTGTACGGCCCAGAAAGCTCAGGTAAAACAACGGTTGCTCTCCATGCAATCGCA
GAAGTTCAAAAAAATGGTGGAGTTGCAGCATTTATTGATGCTGAGCATGCTTTGGATCCAGTATATGCTCAGGCACTTGG
TGTAGATATTGATAATTTATATTTATCTCAGCCTGACCATGGTGAGCAAGGTCTAGAAATTGCAGAAGCATTTGTACGAA
GTGGTGCTGTAGATATCATTATCGTTGACTCTGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCACGTTGGTTTACAAGCGCGATTAATGTCTCAAGCACTACGTAAATTATCAGCAGCTATTTCAAAATCAAATACAAC
AGCTATTTTTATTAACCAAATTCGTGAAAAAGTCGGTGTGATGTTTGGTAACCCTGAAACAACACCTGGGGGCCGCGCCT
TAAAATTCTATAGTTCTGTTCGTCTAGAGGTACGTCGTGCTGAACAATTAAAACAAGGTCAAGACATTGTGGGAAATCGT
ACAAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCGTTTAAGGTCGCAGAAGTAGATATCATGTATGGACAAGGTAT
CTCACGTGAAGGTGAACTTATAGACTTAGGCGTGGAATATGACATCGTTGATAAATCAGGTGCTTGGTATTCTTACAATG
GTGAACGTATGGGTCAAGGTAAAGAAAATGTTAAAATGTTCTTGAAAGAGCATCCTGAACTTGAAGATGAAATCGATCGT
AAGTTGCGTGAGAAGTTGGGCATTTTCGATGGCGACGTTGATGAAAACGAAGCTGATTCACCTCAAACACTTTTTGACGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.948

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

73.171

94.524

0.692
  recA Streptococcus pyogenes NZ131

69.909

94.813

0.663
  recA Streptococcus mutans UA159

65.616

100

0.66
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.657
  recA Streptococcus pneumoniae Rx1

65.517

100

0.657
  recA Streptococcus pneumoniae D39

65.517

100

0.657
  recA Streptococcus pneumoniae R6

65.517

100

0.657
  recA Streptococcus mitis NCTC 12261

66.366

95.965

0.637
  recA Streptococcus mitis SK321

66.066

95.965

0.634
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.389

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

94.813

0.62
  recA Neisseria gonorrhoeae MS11

61.96

100

0.62
  recA Neisseria gonorrhoeae MS11

61.96

100

0.62
  recA Neisseria gonorrhoeae strain FA1090

61.96

100

0.62
  recA Acinetobacter baumannii D1279779

64.724

93.948

0.608
  recA Helicobacter pylori 26695

63.72

94.524

0.602
  recA Vibrio cholerae strain A1552

64.11

93.948

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

93.948

0.602
  recA Acinetobacter baylyi ADP1

64.11

93.948

0.602
  recA Helicobacter pylori strain NCTC11637

63.415

94.524

0.599
  recA Ralstonia pseudosolanacearum GMI1000

65.495

90.202

0.591
  recA Pseudomonas stutzeri DSM 10701

61.35

93.948

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.389

0.573
  recA Glaesserella parasuis strain SC1401

61.61

93.084

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

91.066

0.568