Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCF98_RS02485 Genome accession   NZ_CP133218
Coordinates   544575..545621 (-) Length   348 a.a.
NCBI ID   WP_308895947.1    Uniprot ID   -
Organism   Thiothrix lacustris strain MK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539575..550621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF98_RS02465 (RCF98_02465) csrA 539785..539985 (-) 201 WP_038140170.1 carbon storage regulator CsrA -
  RCF98_RS02470 (RCF98_02470) - 540260..541492 (-) 1233 WP_028487853.1 aspartate kinase -
  RCF98_RS02475 (RCF98_02475) alaS 541526..544138 (-) 2613 WP_308895943.1 alanine--tRNA ligase -
  RCF98_RS02480 (RCF98_02480) - 544135..544575 (-) 441 WP_308895945.1 regulatory protein RecX -
  RCF98_RS02485 (RCF98_02485) recA 544575..545621 (-) 1047 WP_308895947.1 recombinase RecA Machinery gene
  RCF98_RS02490 (RCF98_02490) - 545683..545835 (+) 153 WP_308895949.1 hypothetical protein -
  RCF98_RS02495 (RCF98_02495) - 545915..547702 (+) 1788 WP_308895951.1 class I poly(R)-hydroxyalkanoic acid synthase -
  RCF98_RS02500 (RCF98_02500) pncC 547699..548172 (-) 474 WP_308895953.1 nicotinamide-nucleotide amidase -
  RCF98_RS02505 (RCF98_02505) - 548172..549116 (-) 945 WP_308895955.1 S49 family peptidase -
  RCF98_RS02510 (RCF98_02510) - 549113..549790 (-) 678 WP_308895957.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37095.21 Da        Isoelectric Point: 4.9628

>NTDB_id=872544 RCF98_RS02485 WP_308895947.1 544575..545621(-) (recA) [Thiothrix lacustris strain MK1]
MDENKKKALAAALGQIERQYGKGAVMRMGDSSASRDIEAISTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLTLQVI
AECQKLGGTAAFVDAEHALDPVYAQKLGVNVDDLLVSQPDNGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTGNIKRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEITGS
ETRVKVVKNKVAPPFKQAEFEILYGEGISREGELVDLGAKQGLIGKAGAWYSYKGDKIGQGKDNARNYLKEHPAAAAEIE
KAIREAAFSTPDFAPSAVEESDVEDDDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=872544 RCF98_RS02485 WP_308895947.1 544575..545621(-) (recA) [Thiothrix lacustris strain MK1]
ATGGACGAGAACAAAAAGAAAGCCCTTGCTGCCGCCTTAGGCCAGATTGAGCGCCAATACGGTAAAGGTGCAGTGATGCG
TATGGGTGACTCCAGCGCTTCCCGTGATATTGAAGCCATTTCTACTGGCTCATTGGGTTTGGATATTGCGTTGGGTATTG
GTGGTCTACCTAAAGGGCGTGTGATCGAAATTTATGGCCCAGAGTCTTCTGGGAAAACCACATTGACGCTGCAAGTCATT
GCCGAGTGCCAAAAGCTTGGCGGTACGGCGGCATTTGTGGATGCGGAACACGCGCTTGACCCAGTTTATGCGCAAAAGCT
CGGTGTAAACGTGGACGACCTGCTGGTTTCCCAGCCAGATAATGGTGAACAAGCGTTGGAAATTACTGACATGTTGGTGC
GTTCTGGCGCAGTTGACATTGTCGTCGTGGACTCAGTAGCGGCTTTGACCCCGAAAGCTGAAATCGAAGGCGATATGGGC
GACTCACACGTTGGCTTACAAGCACGTCTGATGTCACAAGCCTTGAGAAAATTGACCGGGAACATCAAGCGTTCCAACAC
CATGGTGATTTTCATCAACCAGATTCGGATGAAAATCGGTGTTATGTTTGGCAACCCGGAAACCACGACCGGCGGTAATG
CGCTGAAATTCTACGCTTCGGTGCGTCTCGATATTCGCCGCATTGGTGCGATCAAGAAGGGCGACGAAATCACCGGTTCT
GAAACCCGCGTGAAAGTGGTTAAGAACAAGGTTGCGCCACCGTTTAAGCAAGCTGAGTTTGAAATCCTCTACGGTGAAGG
CATTTCCCGCGAAGGCGAATTGGTTGATTTGGGTGCTAAACAAGGACTGATTGGCAAAGCAGGTGCATGGTACAGTTATA
AAGGTGATAAAATTGGCCAAGGTAAGGACAATGCTCGTAATTACCTGAAAGAACACCCGGCCGCTGCGGCTGAAATTGAA
AAAGCGATCCGCGAAGCCGCATTTAGTACGCCCGATTTTGCCCCCTCTGCTGTTGAAGAATCGGATGTAGAGGACGACGA
TGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.287

100

0.753
  recA Acinetobacter baumannii D1279779

73.563

100

0.736
  recA Acinetobacter baylyi ADP1

72.543

99.425

0.721
  recA Vibrio cholerae strain A1552

71.387

99.425

0.71
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.387

99.425

0.71
  recA Glaesserella parasuis strain SC1401

70.115

100

0.701
  recA Neisseria gonorrhoeae MS11

73.765

93.103

0.687
  recA Neisseria gonorrhoeae MS11

73.765

93.103

0.687
  recA Neisseria gonorrhoeae strain FA1090

73.765

93.103

0.687
  recA Ralstonia pseudosolanacearum GMI1000

70.997

95.115

0.675
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.278

93.966

0.632
  recA Helicobacter pylori strain NCTC11637

64.286

96.552

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

94.54

0.621
  recA Helicobacter pylori 26695

63.69

96.552

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

92.529

0.603
  recA Streptococcus pneumoniae Rx1

63.889

93.103

0.595
  recA Streptococcus pneumoniae D39

63.889

93.103

0.595
  recA Streptococcus pneumoniae R6

63.889

93.103

0.595
  recA Streptococcus pneumoniae TIGR4

63.889

93.103

0.595
  recA Streptococcus pyogenes NZ131

63.497

93.678

0.595
  recA Streptococcus mutans UA159

62.577

93.678

0.586
  recA Streptococcus mitis SK321

62.963

93.103

0.586
  recA Streptococcus mitis NCTC 12261

62.654

93.103

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

61.212

94.828

0.58
  recA Lactococcus lactis subsp. cremoris KW2

60.429

93.678

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

93.103

0.566