Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCF95_RS22805 Genome accession   NZ_CP133197
Coordinates   3899384..3900439 (-) Length   351 a.a.
NCBI ID   WP_228287957.1    Uniprot ID   A0AA51MN72
Organism   Thiothrix subterranea strain DNT53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3894384..3905439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF95_RS22785 csrA 3894606..3894806 (-) 201 WP_202717756.1 carbon storage regulator CsrA -
  RCF95_RS22790 - 3895072..3896303 (-) 1232 Protein_4486 aspartate kinase -
  RCF95_RS22795 alaS 3896336..3898947 (-) 2612 Protein_4487 alanine--tRNA ligase -
  RCF95_RS22800 - 3898944..3899384 (-) 441 WP_308134873.1 regulatory protein RecX -
  RCF95_RS22805 recA 3899384..3900439 (-) 1056 WP_228287957.1 recombinase RecA Machinery gene
  RCF95_RS22810 - 3900611..3901246 (+) 636 WP_308134872.1 Uma2 family endonuclease -
  RCF95_RS22815 - 3901294..3902361 (-) 1068 WP_202717761.1 DUF1566 domain-containing protein -
  RCF95_RS22820 - 3902550..3904346 (+) 1797 WP_308873777.1 class I poly(R)-hydroxyalkanoic acid synthase -
  RCF95_RS25040 - 3904343..3904818 (-) 476 Protein_4493 CinA family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37338.65 Da        Isoelectric Point: 5.1727

>NTDB_id=872433 RCF95_RS22805 WP_228287957.1 3899384..3900439(-) (recA) [Thiothrix subterranea strain DNT53]
MDENKKKALAAALGQIERQFGKGTVMRMGDSSAARDIDVISTGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFIDAEHALDPIYAQKIGVNVDDLLVSQPDNGEQALEIADMLVRSNAVDMVVVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEITGS
ETRVKVVKNKVAPPFKQAEFEILYGEGISREGELVDLGSKQGLVGKAGAWYSYKGEKIGQGKDNARNYLKEHPAAAAEIE
KAIREACMNAPGFAATVTEEADSDAGLDDVV

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=872433 RCF95_RS22805 WP_228287957.1 3899384..3900439(-) (recA) [Thiothrix subterranea strain DNT53]
ATGGACGAGAACAAAAAGAAAGCCCTCGCCGCCGCCCTAGGCCAGATTGAACGTCAGTTTGGCAAAGGCACTGTGATGCG
CATGGGCGACTCCAGTGCTGCCCGCGACATCGACGTGATTTCTACCGGCTCATTAGGGCTGGACATTGCCCTTGGTATTG
GCGGCCTGCCCAAAGGACGTGTCGTCGAAATTTACGGCCCGGAATCTTCCGGCAAAACCACTCTGACGCTGCAAGTGATC
GCCGAATGCCAAAAAATGGGCGGCACAGCGGCGTTCATTGATGCGGAACACGCGCTTGACCCGATTTACGCGCAAAAAAT
TGGCGTTAACGTCGATGATTTGCTGGTGTCCCAACCGGATAACGGCGAGCAGGCGTTGGAAATTGCCGACATGCTGGTGC
GTTCCAACGCAGTGGATATGGTGGTGGTCGACTCGGTTGCAGCGTTGACGCCAAAAGCGGAAATTGAAGGCGATATGGGT
GATTCCCACGTCGGTTTGCAAGCACGGTTAATGTCACAAGCCCTGCGCAAACTCACCGGTAATATCAAGCGTTCCAATAC
CTTGGTGATTTTCATCAACCAGATTCGGATGAAAATCGGCGTAATGTTCGGCAACCCGGAAACGACGACGGGTGGTAACG
CGCTGAAATTCTACGCTTCCGTGCGTCTCGATATTCGCCGCATTGGTGCGATTAAGAAGGGTGACGAAATTACTGGCTCT
GAAACCCGTGTCAAAGTGGTTAAGAACAAAGTCGCGCCACCGTTCAAACAAGCCGAATTTGAAATTCTGTACGGCGAAGG
CATTTCTCGCGAAGGCGAATTGGTTGACCTCGGTTCCAAGCAAGGGCTGGTCGGCAAAGCTGGCGCGTGGTACAGCTATA
AAGGTGAAAAAATCGGTCAAGGCAAGGATAATGCCCGCAATTACTTGAAAGAGCATCCGGCGGCGGCGGCTGAAATTGAA
AAAGCCATCCGCGAAGCTTGCATGAATGCGCCCGGTTTTGCTGCCACCGTTACCGAAGAAGCCGACAGCGATGCCGGTCT
TGATGACGTTGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.945

98.86

0.761
  recA Acinetobacter baylyi ADP1

72.046

98.86

0.712
  recA Acinetobacter baumannii D1279779

75.915

93.447

0.709
  recA Vibrio cholerae strain A1552

70

99.715

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70

99.715

0.698
  recA Glaesserella parasuis strain SC1401

69.883

97.436

0.681
  recA Ralstonia pseudosolanacearum GMI1000

72.34

93.732

0.678
  recA Neisseria gonorrhoeae MS11

73.148

92.308

0.675
  recA Neisseria gonorrhoeae MS11

73.148

92.308

0.675
  recA Neisseria gonorrhoeae strain FA1090

73.148

92.308

0.675
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.89

93.162

0.632
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

93.732

0.613
  recA Helicobacter pylori strain NCTC11637

65.138

93.162

0.607
  recA Helicobacter pylori 26695

64.832

93.162

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

91.738

0.598
  recA Streptococcus pneumoniae TIGR4

64.506

92.308

0.595
  recA Streptococcus pneumoniae Rx1

64.506

92.308

0.595
  recA Streptococcus pneumoniae D39

64.506

92.308

0.595
  recA Streptococcus pneumoniae R6

64.506

92.308

0.595
  recA Streptococcus pyogenes NZ131

63.804

92.877

0.593
  recA Streptococcus mutans UA159

63.497

92.877

0.59
  recA Streptococcus mitis SK321

63.58

92.308

0.587
  recA Streptococcus mitis NCTC 12261

63.272

92.308

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

62.037

92.308

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.35

92.877

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.182

93.732

0.564