Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RB649_RS07495 Genome accession   NZ_CP133179
Coordinates   1390947..1391969 (-) Length   340 a.a.
NCBI ID   WP_011173842.1    Uniprot ID   P61500
Organism   Thermus thermophilus HB27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385947..1396969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB649_RS07475 (RB649_07475) - 1387097..1387738 (-) 642 WP_011173838.1 S4 domain-containing protein -
  RB649_RS07480 (RB649_07480) fabZ 1387738..1388166 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RB649_RS07485 (RB649_07485) - 1388173..1389210 (-) 1038 WP_011173840.1 rod shape-determining protein -
  RB649_RS07490 (RB649_07490) rny 1389222..1390946 (-) 1725 WP_011173841.1 ribonuclease Y -
  RB649_RS07495 (RB649_07495) recA 1390947..1391969 (-) 1023 WP_011173842.1 recombinase RecA Machinery gene
  RB649_RS07500 (RB649_07500) thpR 1391920..1392516 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  RB649_RS07505 (RB649_07505) - 1392513..1393697 (-) 1185 WP_011173844.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  RB649_RS07510 (RB649_07510) - 1393670..1394446 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  RB649_RS07515 (RB649_07515) - 1394486..1395535 (+) 1050 WP_011173846.1 MFS transporter -
  RB649_RS07520 (RB649_07520) - 1395540..1396181 (+) 642 WP_041443582.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36341.85 Da        Isoelectric Point: 5.3823

>NTDB_id=872293 RB649_RS07495 WP_011173842.1 1390947..1391969(-) (recA) [Thermus thermophilus HB27]
MDESKRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIA
QAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLAKSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGV
KVRVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGKEKAAEALRERPELLEEIR
TKVLERAGEVVLAAGEDEGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=872293 RB649_RS07495 WP_011173842.1 1390947..1391969(-) (recA) [Thermus thermophilus HB27]
ATGGACGAGAGCAAGCGCAAGGCCCTGGAGAACGCCCTGAAGGCGATTGAGAAGGAGTTCGGCAAGGGGGCGGTGATGCG
GCTGGGCGAGATGCCCAAGCAGCAGGTGGACGTGATCCCCACCGGCTCCCTCGCCCTAGACCTCGCCCTGGGGATCGGCG
GCATCCCCCGGGGGCGGATCGTGGAGATCTATGGCCCCGAGTCCGGGGGCAAGACCACCCTCGCCCTCACCATCATCGCC
CAGGCCCAGAGGCGGGGCGGGGTGGCCGCCTTCGTGGACGCGGAGCACGCCCTGGACCCCCTGTACGCCCAGCGCCTCGG
CGTCCAGGTGGAGGACCTCCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGTGGAGCTCCTCGCCCGCT
CGGGGGCGGTGGACGTGATCGTGGTGGACTCGGTGGCCGCCTTGGTCCCCCGGGCGGAGATTGAGGGGGAGATGGGGGAC
CAGCACGTGGGCCTCCAGGCCCGGCTCATGAGCCAGGCCCTTCGCAAGCTCACCGCGGTGCTCGCCAAGAGCAACACCGC
CGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGGTCACGTACGGCAACCCCGAGACCACCCCGGGGGGGAGGGCGC
TGAAGTTCTACGCCAGCGTGCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGGAACGAGGCCGTGGGCGTC
AAGGTGCGGGTCAAGGTGGTGAAGAACAAGCTCGCCCCCCCCTTCCGCGAGGCGGAGCTGGAGATCTACTTCGGCCGGGG
GCTGGACCCGGTGGCCGACCTGGTGAACGTGGCCGTGGCCGCGGGGGTCATTGAGAAGGCCGGGTCCTGGTTCTCCTACG
GGGAGCTCCGCCTGGGCCAGGGGAAGGAGAAGGCGGCCGAGGCCCTGCGGGAGCGGCCCGAGCTTTTGGAGGAGATCCGC
ACCAAGGTCTTGGAGCGGGCCGGGGAGGTGGTCCTGGCCGCGGGCGAGGACGAGGGGGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P61500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.196

96.176

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

100

0.615
  recA Pseudomonas stutzeri DSM 10701

63.467

95

0.603
  recA Acinetobacter baylyi ADP1

59.302

100

0.6
  recA Streptococcus pyogenes NZ131

62.346

95.294

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.346

95.294

0.594
  recA Glaesserella parasuis strain SC1401

58.48

100

0.588
  recA Streptococcus pneumoniae TIGR4

61.162

96.176

0.588
  recA Streptococcus pneumoniae Rx1

61.162

96.176

0.588
  recA Streptococcus pneumoniae D39

61.162

96.176

0.588
  recA Streptococcus pneumoniae R6

61.162

96.176

0.588
  recA Streptococcus mutans UA159

61.728

95.294

0.588
  recA Vibrio cholerae strain A1552

61.538

95.588

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

95.588

0.588
  recA Streptococcus mitis NCTC 12261

61.801

94.706

0.585
  recA Streptococcus mitis SK321

61.801

94.706

0.585
  recA Acinetobacter baumannii D1279779

60.429

95.882

0.579
  recA Neisseria gonorrhoeae MS11

60.494

95.294

0.576
  recA Neisseria gonorrhoeae strain FA1090

60.494

95.294

0.576
  recA Neisseria gonorrhoeae MS11

60.494

95.294

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

94.412

0.576
  recA Helicobacter pylori strain NCTC11637

59.574

96.765

0.576
  recA Helicobacter pylori 26695

59.574

96.765

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.752

95

0.568
  recA Ralstonia pseudosolanacearum GMI1000

61.342

92.059

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.061

97.059

0.544